-
hey @jodyphelan when I ran these SRA Accession Number on TB-Profiler_v4.0.1, v4.0.1, v4.0.2, v4.0.3 in conda Package and Docker Container it is showing that it is sensitive for all drugs, while these …
-
Hi Jody,
It's great to have WHO updated definations of XDR and pre-XDR in the latest version of TB-Profiler. Thanks!
It seems the old classification type pre-MDR is now replaced by RR-TB and HR-…
-
Dear Jody,
I'm unable to install TBProfiler on any of my ubuntu operating system. Can you please help me with this error:
```
`Running command:
set -u pipefail; snpEff -Djava.net.useSystemProx…
-
Hello,
I am trying to annotate a custom VCF using NCBI's GFF3 and FASTA for the bacteria _Mycobacterium tuberculosis_ (https://www.ncbi.nlm.nih.gov/genome/?term=Mycobacterium+tuberculosis+H37Rv) and …
-
Applicant: @loweyvana
Welcome to the Ersilia Open Source Initiative. This issue will serve to track all your contributions for the project “Improve the documentation and outreach material of the…
-
Error started at -
Running command:
set -u pipefail; bcftools view -v snps ./ef9ac70d-7469-47e0-bee1-9ddc08f313a6.targets.vcf.gz | combine_vcf_variants.py --ref /home/micro/miniconda3/envs/tb-profil…
-
```
[prophyle] 2020-10-11 23:51:19 Unfinished, an error occurred (error code 1, 6.0 MB used): cat mycobacterium_tuberculosis/propagation/*.tsv > mycobacterium_tuberculosis/index.fa.kmers.tsv
Error: …
-
Hi Jody,
Thank you for making this useful tool in MTB WGS data analysis!
I have two questions about lineage typing method in TB-Profiler:
1. In your published paper, _Napier, G., Campino, S., M…
-
For new term requests, please provide the following information:
## Preferred term label
Enhances host inflammasome activation
Examples:
1. Alpha-hemolysin from Staphylococcus aureus activat…
-
These questions may sounds silly to you. I do want to confirm and get some heads up from you.
These may also help late followers, so I will sum these up once I figure them out.
Thanks.
- The sour…