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Trying to get a Docker image set up so this code is more portable. We are making progress, but stuck on a runtime error in PVRreconstructionGPU. Has anyone encountered a similar issue? Any thoughts?
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# Description
This issue will be used to update the GT segmentation names to be in conformity with the [new conventions](https://intranet.neuro.polymtl.ca/data/dataset-curation.html#label-names).
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While looking for the PAM50 data in @benjamindeleener 's old backup server directory (related to https://github.com/neuropoly/data-management/issues/235), I found these data:
Terminal output
```…
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I am not able to run the code DataTransfer.py on my data that are in .nii.gz format.
I have two folders with images and labels with same name.nii.gz
The code reads the png format or .nii format?
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# Description
AMU7T is a 3D template created in 2 contrasts acquired at 7T:
- qT1-> from 26 subjects
- t2s -> from 72 subjects
an atlas of 50 labels is associated (WM parcels from [Levi et al…
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Hi,
I have some noddi data acquired at bvalues of 700 and 2000. They were acquired in separate sequences one after another - they have been processed identically for distortion and eddy corrections…
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WARNING: In /tmp/SimpleITK-build/ITK/Modules/IO/NIFTI/src/itkNiftiImageIO.cxx, line 1934
NiftiImageIO (0x46dded0): /mnt/d/Desktop/paper/LMa-UNet-main/data/nnUNet_raw/Dataset027_ACDC/imagesTr/patient0…
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# Description:
When the new labels were initially segmented in the AMU7T atlas,
The gray matter labels were segmented into sub labels. Wanted to save original [PAM50 IDs](https://github.com/spinal…
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Hello,
Thanks for your wonderful work for this community, it's really a big advance for medical image analysis.
I'm doing some work on this, could you please share the details about the prep…
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Can you tell me how dataset folder should look like? Mine looks like:
> --\data
> ----\dataset
> -------\BRATS2018
> -----------\training
> ---------------\HGG
> -------------------HGG147_Flai…