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# Describe the problem
* **I'm submitting a:**
- [x] problem running the software
- [x] bug report
- [ ] feature request
- [ ] question
* **My MSFragger use case:**
- [x] _Closed_…
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# Describe the problem
* **I'm submitting a:**
- [x] problem running the software
- [ ] bug report
- [ ] feature request
- [ ] question
* **My MSFragger use case:**
- [ ] _Closed_…
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Definition: A format for storage, exchange, and processing of protein identifications created from ms/ms-derived peptide sequence data.
Parent: format_3245
Documentation: http://tools.proteomecenter.…
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# Describe the problem
* **I'm submitting a:**
- [x] problem running the software
- [x] bug report
- [ ] feature request
- [ ] question
* **My MSFragger use case:**
- [x] _Closed_…
-
# Describe the problem
* **I'm submitting a:**
- [x] problem running the software
- [ ] bug report
- [ ] feature request
- [ ] question
* **My MSFragger use case:**
- [x] _Closed_…
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# Describe the problem
**"Index out of range" error before run is completed**
Using the MSFragger/FragPipe issue reporting template as I'm getting the error while running MSFragger-GUI, but I get…
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Hello, I am having problems in processing files. As you can see below, it is crashing at the PeptideProphet step, am I doing something wrong?
Forgot to mention that the report is based on search us…
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Tried running with two small mzml files, just 1000 spectra in each. Philosopher report failed, see log below.
Full log: [log_2018-02-28_15-05-03.txt](https://github.com/prvst/philosopher/files/176…
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# Describe the problem
* **I'm submitting a:**
- [x] problem running the software
- [ ] bug report
- [ ] feature request
- [ ] question
* **My MSFragger use case:**
- [ ] _Closed_…
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Hello,
I believe I have an issue/might need help with peptide prophet.
I'm on Linux and try to run the latest version of MSFraggerGUI and I get that kind of error when I try to analyze an MZML fil…