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Hello,
I want to rarefy an already existing OTU matrix (OTU_matrix.csv ).
According to the tutorial, I first need to create a shared file. I downloaded the 'AmazonData' example data folder to run t…
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Hey HiFi team,
I am trying to run this nextflow pipeline on real data on HPC/slurm. I am able to run the test data successfully and run into the following error when I try to execute the pipeline w…
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I think the estimates from these methods are overly pessimistic for my data because some of the assumptions in the equations don't apply, and want to mitigate by calculating "species" estimate based o…
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Okay, trying to run qc-rarefy in qiime2-2023.5 using CLI:
```
qiime gemelli qc-rarefy \
--i-table feature-table.qza \
--i-rarefied-distance RPCA-rarefy-distance.qza \
--i-unrarefied-d…
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I get a error stating that a Boolean feature of NumPy has been deprecated since NumPy version 1.20. The file requirements state the version of NumPy must be greater than 1.21.
"FutureWarning:
I…
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Hey again,
I was able to run this pipeline successfully with test and real data, but am running into an issue I can't solve with a new set of real data. Here is my command:
```
nextflow run mai…
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Hi,
I have ran the analysis of 4 smart-cell runs after renaming the fastq to make them globally unique.
It seemed to go well but after 3 days of computing (44 threads 292GB RAM), it finally died in …
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I tried the latest AMR++(v3.0.1) code and still got an error but this time
with a different error.
It showed :Error executing process >
'FAST_AMRplusplus:FASTQ_RESISTOME_WF:runrarefaction (Virome1)…
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Hi I'm new to using this great tool. I have a small dataset of 20 samples. Including two groups and 10 timepoints for each group. I was trying to use the generate_alpha_test_long function to do alpha…
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Currently when unzipping a reproducibility supplement, all files are extracted to the current working directory. This should be updated so that the files are extracted to a directory with the same …