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Hello,
I successfully run the scripts on my genomes. It might be heplful if you add a linked to your Collection of Position Weight Matrices in the ReadMe file and a description of the cluster buste…
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**Describe the bug**
First of all, I have been running pySCENIC in a distributed cloud environment, not in an HPC environment. My issue occurs when running ctx in the "dask_cluster" mode, which is th…
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Hi this is a continuation of the #202 .Where you suggest how to extract regulons from a csv file.
Thank you, but what if i have a pickled file which i get after running df2regulons on the motif fil…
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Hi
Thanks for this wonderful tool.. Is there any option to calculate RSS based on cell_type and condition to visualise cell_type specific RSS activity for each condition side by side in heatmap?
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Hi pySCENIC team,
I've downsampled my seurat object to 500 cells and created my loom file using ```SCopeLoomR```.
The ```pyscenic grn``` ran successfully. But when I run ```pyscenic ctx``` the com…
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hello everyone,
First of all, thanks for developing decoupleR, I am using it in my project and I am finding it extremely useful.
I have more of a theoretical question regarding the TF/Pathway ac…
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Hello, aertslab
Since all regulons targeting fewer than 20 genes are dropped (in the modules_from_adjacencies function, why I got regulons with fewer than 20 genes?
![image](https://user-images.gi…
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Hi,
If I already have my own list of TFs and their targets from some external resource (RegNetwork for example), can I use it with AUCell and skip GENIE3 and enrichment step? If yes, how can I do …
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**Describe the bug**
Hello pySCENIC and @cflerin ,
I generated the pbmc10k_scenic_integrated-output.loom from the 1st official tutorial (http://htmlpreview.github.io/?https://github.com/aertslab/SCE…
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https://mp.weixin.qq.com/s/y3drVOyPYgI5Cd2Y6QLTgA