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https://mp.weixin.qq.com/s/5wugXfWD4SfN25qGZk4d8Q
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Until now, these files only seem accessible when in the same folder and thus one cannot use pkg_resources to access them when being somewhere else.
I suspect that this is due to a missing general s…
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### Description of the bug
```
Pipeline completed with errors-
Error executing process > 'NFCORE_QUANTMS:QUANTMS:DIA:DIANNCONVERT (1)'
Caused by:
Process `NFCORE_QUANTMS:QUANTMS:DIA:DIANNCONV…
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### Description of feature
Dear @daichengxin @vdemichev @jpfeuffer:
I have started testing the DIANN pipeline in quantms. The main problem I found is that still the pipeline is **really slow**.…
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We have an example of one dataset converted in this PR:
https://github.com/bigbio/proteomics-metadata-standard/pull/541
Let us know what you think.
If ok, we can import 204 more datasets fro…
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- [x] I think the source names are not correct in https://github.com/bigbio/proteomics-metadata-standard/blob/master/annotated-projects/PXD002088/sdrf.tsv
they differ between fractions
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I had some problems with this anndata (the first one in this link: https://developmental.cellatlas.io/fetal-immune#DatasetModalscRNA-seq1). It couldn't get metadata about samples when extracting from …
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Hi @levitsky @pcm32 @foellmelanie @daichengxin @lgatto @anjaf :
We have been developing a simple web app to help the users to autocomplete Ontology terms and PTMs for the SDRF columns (https://ann…
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Dear all,
after mentioning a few times that there are some issues with non-consistent vocabulary usage I finally read all sdrf tables and compared all labels/column-names (using my R package wrProt…
wraff updated
2 years ago
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It seems that MassIVE does not provide download links for its resources over HTTPS, but it is still possible to download resources over HTTPS from the website (e.g. [MSV000080374](https://massive.ucsd…