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bigbio
/
sdrf-pipelines
A repository to convert SDRF proteomics files into pipelines config files
Apache License 2.0
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Big PR with multiple validations - [DO NOT MERGE YET]
#169
ypriverol
opened
16 hours ago
2
OLS refactoring.
#168
ypriverol
closed
1 week ago
1
Report error with validate SDRF if factor value column doesn't correspond to characteristics column
#167
kai-lawsonmcdowall
opened
2 months ago
7
Better error message with SDRF to OpenMS
#166
ypriverol
opened
3 months ago
0
Update openms.py
#165
ypriverol
closed
3 months ago
1
Error When converting to OpenMS enzymes
#164
ypriverol
closed
3 months ago
0
small changes realted with OLS.
#163
ypriverol
closed
5 months ago
1
Major changes and bug fixing
#162
ypriverol
closed
5 months ago
1
Searching for a term found as substring in OLS.
#161
ypriverol
closed
5 months ago
0
OLS search terms pagination error
#160
ypriverol
closed
5 months ago
0
Proposal for refactoring & higher maintainability
#159
di-hardt
opened
6 months ago
6
Free text validation
#158
TineClaeys
opened
6 months ago
1
Decide the main developer behind version 0.0.25 in sdrf-pipelines
#157
ypriverol
closed
6 months ago
1
sdrf pipelines version 0.0.25
#156
ypriverol
opened
6 months ago
0
Validate file duplications if not multiplexing is available
#155
ypriverol
opened
7 months ago
0
Validator option for the different flavors
#154
jpfeuffer
opened
7 months ago
0
The empty cells validation is not good
#153
ypriverol
opened
7 months ago
0
Problems understanding TMT label in sdrf file
#152
MetteBoge
opened
8 months ago
0
Moving to OLS4 is needed
#151
ypriverol
closed
9 months ago
0
PLEASE DO NOT MERGE Fix minor issues for the terms validation
#150
ypriverol
closed
9 months ago
1
Refactor testing and arbitrary extension handling
#149
jspaezp
closed
10 months ago
2
Conversion bruker data
#148
ypriverol
closed
10 months ago
13
OpenMS converter does not handle "cleavage agent" = "not applicable" correctly
#147
davidecarlson
closed
5 months ago
20
Fixed some errors introduced before in #PR 44
#146
ypriverol
closed
11 months ago
0
[Pitch] Partial keep raw in OpenMS
#145
jspaezp
closed
10 months ago
14
Check to see if key is present *and* values are set
#144
lazear
closed
1 year ago
3
Fix if-else branch in column name validation
#143
lazear
closed
1 year ago
0
Flexible key-value pair location
#142
WangHong007
closed
1 year ago
0
Why are these elements private?
#141
fabianegli
closed
10 months ago
1
wiff supporting and default label modifications
#140
daichengxin
closed
1 year ago
0
Erroneous TMT label extraction logic
#139
fabianegli
opened
1 year ago
0
Added a few more parameters for generating the maxquant parameter file
#138
veitveit
closed
1 year ago
8
Unimod and ols error
#137
ypriverol
closed
5 months ago
1
changes by pyupgrade --py36-plus
#136
fabianegli
closed
1 year ago
0
add boilerplate gitignore items for Python package development
#135
fabianegli
closed
1 year ago
0
Version option for CLI
#134
fabianegli
closed
1 year ago
0
use standard pytest file naming convention
#133
fabianegli
closed
1 year ago
0
Random minor imporvements
#132
fabianegli
closed
1 year ago
0
ENH: use TLS by default
#131
fabianegli
closed
2 years ago
0
[BUG] openms/unimod.py
#130
fabianegli
closed
10 months ago
1
fix-zumma-zooma
#129
fabianegli
closed
2 years ago
0
use isort and black
#128
fabianegli
closed
2 years ago
0
strange method name
#127
fabianegli
closed
2 years ago
1
CI is failing, probably due to resource location change
#126
fabianegli
closed
2 years ago
3
Data file distribution
#125
fabianegli
closed
2 years ago
1
Access to yml and xml files
#124
veitveit
closed
2 years ago
3
Various fixes and adding conversion to Normalyzer
#123
veitveit
closed
1 year ago
7
[ENH] Have a "--version" parameter to print versions
#122
jpfeuffer
closed
1 year ago
5
[BUG] using unassigned variable in except block after failed assignment in try
#121
fabianegli
opened
2 years ago
1
pyyaml added to the requirements
#120
ypriverol
closed
2 years ago
4
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