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bigbio
/
sdrf-pipelines
A repository to convert SDRF proteomics files into pipelines config files
Apache License 2.0
16
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21
forks
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[ENH] Have a "--version" parameter to print versions
#122
jpfeuffer
closed
2 years ago
5
[BUG] using unassigned variable in except block after failed assignment in try
#121
fabianegli
opened
2 years ago
1
pyyaml added to the requirements
#120
ypriverol
closed
2 years ago
4
[SECURITY] Move from xml to defusedxml for XML parsing
#119
fabianegli
closed
1 year ago
1
[ENH] Use logging instead of print
#118
fabianegli
closed
11 months ago
1
[MAINT] rename master branch to main
#117
fabianegli
closed
8 months ago
3
[MAINT] remove validate_sdrfs.sh
#116
fabianegli
closed
2 years ago
1
[ENH] Empty rows in the middle of the dataset are erroneously accepted
#115
fabianegli
opened
2 years ago
0
[MAINT] ignore formatting commits in blame
#114
fabianegli
opened
2 years ago
1
[DISCUSSION] A more concise CLI that is well behaved
#113
fabianegli
opened
2 years ago
0
[ENH] Need for more comprehensive integration testing
#112
fabianegli
opened
2 years ago
4
[DISCUSSION] Permissive or strict parser?
#111
fabianegli
opened
2 years ago
0
[QUESTION] What purpose does the `validate_sdrfs.sh` script have in this repo?
#110
fabianegli
closed
2 years ago
6
[DOC] Link to relevant repos
#109
fabianegli
opened
2 years ago
3
[ENH] Consistent API input checks with useful feedback on failure
#108
fabianegli
opened
2 years ago
0
[MAINT] Favor pathlib over path string manipulation
#107
fabianegli
opened
2 years ago
1
[CODE] Use pandas to parse the SDRF
#106
fabianegli
closed
2 years ago
1
[ENH] Using some Python coding best practices for open source repositories
#105
fabianegli
opened
2 years ago
5
[Feature request] Make parsed SDRF data usable
#104
fabianegli
opened
2 years ago
0
[CI/CD] Should't tests be run before a package is published?
#103
fabianegli
opened
2 years ago
0
[DOC] Document how to run tests
#102
fabianegli
opened
2 years ago
2
add acquisition column
#101
daichengxin
closed
2 years ago
1
Compatible with ITRAQ
#100
daichengxin
closed
2 years ago
0
Added script to add data anlysis parameters to sdrf + extended maxquant script to include several of them
#99
veitveit
closed
2 years ago
4
retrieve strategy
#98
ypriverol
closed
2 years ago
0
Update MSstats
#97
daichengxin
closed
3 years ago
0
Fix bug
#96
daichengxin
closed
3 years ago
0
Fixed bugs
#95
daichengxin
closed
3 years ago
0
Fixed bugs
#94
daichengxin
closed
3 years ago
0
added most of enzymes in PSI-MS for OpenMS
#93
ypriverol
closed
3 years ago
0
Fixed errors
#92
daichengxin
closed
3 years ago
1
Fixed errors
#91
daichengxin
closed
3 years ago
1
maxquant parameter file has typo
#90
foellmelanie
closed
2 years ago
1
maxquant parameter file cannot have fragment and precursor tolerance in different units
#89
veitveit
closed
2 years ago
1
[Feature request / bug ]Missing warning for default value selection
#88
nicni16
closed
2 years ago
0
Minor bug fixes
#87
jgriss
closed
3 years ago
4
[BUG] TMT16 labels are incorrect in openms.py
#86
jgriss
closed
2 years ago
0
[Usability] Fix uncaught exception when unsupported labels are used in SDRF file
#85
jgriss
closed
8 months ago
1
msstats conversion and factor value validation
#84
daichengxin
closed
3 years ago
1
Add mandatory replicate column validation
#83
daichengxin
closed
3 years ago
0
Check for empty cells. Also implicitly checks for too many column headers
#82
jpfeuffer
closed
3 years ago
0
[Feature request] Allow "merging" of technical replicates in MQ exporter
#81
jpfeuffer
closed
11 months ago
2
technical replicates are wrongly handle.
#80
ypriverol
closed
3 years ago
3
Added new enzymes for OpenMS
#79
ypriverol
closed
3 years ago
6
small change in material type factor value
#78
ypriverol
closed
3 years ago
0
Add unit tests
#77
jpfeuffer
closed
3 years ago
0
bug fix when only one factor value is provided
#76
ypriverol
closed
3 years ago
0
Error exporting openMS
#74
ypriverol
closed
3 years ago
0
Error SDRF pipeline to OpenMS
#75
ypriverol
closed
3 years ago
0
Fixed some errors
#73
daichengxin
closed
3 years ago
2
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