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Hello,
I came across the following issue when using Biopython to parse genbank files produced by the "pharokka" program. My parsing script breaks with a ValueError parsing this particular record.
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- think about how to write intro
- take notes on interesting/relevant papers
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https://github.com/bgruening/galaxytools/blob/6817ef65c64c0800e21815822c38beba52075f75/tools/racon/racon.xml#L56
There is a missing file format for this Racon Wrapper. The input of the overlap requ…
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Hi John
I'm trying to filter out unitigs associated with antibiotic resistance. I used unitig-counter but I am not sure what output file I should use to use pyseer later. Could you specify the use …
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[We ignore the disaster in the antibiotics market at our peril](https://www.ft.com/content/4da1c6e4-603d-11e9-9300-0becfc937c37) Financial Times article on economics of Antibiotic Research.
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Hi!
I was wondering if there is a way to download a table that contains the accession number or name of the gene and the mechanism of resistance. When I download the aro.tsv from the CARD site (ht…
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From the wiki:
```
3. gene | 1=gene, 0=non-coding (same as metadata column 2)
4. var_only | 1=variant only, 0=presence/absence (same as metadata column 3)
```
From my understanding, if the '…
ghost updated
3 years ago
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Hi all!
I analysed some samples that contain a mutation related with amikacin resitance, checked by other laboratoy techniques, but when I obtain amended results file, this mutation (genomic coordi…
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**Describe the bug**
I believe there may be a format incompatibility with RGI bwt output (--include_wildcards). It looks like when multiple reference gene lengths are identified, it throws off pars…
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Hello @Shafayat115,
I hope this message finds you well. My name is kanami yagimoto, and I am writing to inquire about the LM-ARG repository on GitHub. I came across the following paper:
Ahmed, S…