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I just discovered the llvm-mca integration, that's awesome!
With the -timeline option you do get an idea of the instruction dependency chains:
https://godbolt.org/z/-cMrJI
But it would be nicer i…
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I am trying to extract animal mitochondrial genome from short reads data using getorganelle. the script is-
get_organelle_from_reads.py -1 /home/pragya/hornbill/great/NZH/analysis/fastp/NZH_illumina…
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I have a internal website in my client which communicates with sharepoint via Microsoft.PowerShell.SDK, which means that the C# project is executing powershell comands.
After updating all PowerShell …
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Since too many reads just introduce more error edges in the assembly graph, we should add a step for subsampling beofre assembly. [seqtk](https://github.com/lh3/seqtk) would be the obvious speedy cand…
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- circular graph is not a problem, MongoDB deals with this and does not enter an infinite loop
- how specify "entry point" of the graph?
- how "backtravers"? *
* Here we really only need 2 links…
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Just an idea. It would be nice if scaffolds/contigs could be annotated by if they are connected or not in the assembly graph.
If the assembler outputs a .gfa, [gfatools](https://github.com/lh3/gf…
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hi everyone, i'm trying to evaluate the mithocondrial DNA of my sample (fusarium sp.);
i performed the assembly with flye tool on galaxy.eu and use the fastg file produced by the tool.
i always get …
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Hi team,
I am trying to replicate the HPRC year1v2 PGGB steps stated here : https://github.com/pangenome/HPRCyear1v2genbank
I am using all of HPRC assemblies, 20 haplotypes from my data and CHM…
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Suppose we can combine multiple assembly graphs and do comparisons between graph structure, label graphs well, etc. What are some reasons we would want to do this for, you know, biology purposes? (For…
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**PLEASE DO NOT MAKE SUPPORT REQUESTS HERE**
Please the Biostars forum instead:
https://www.biostars.org/new/post/?tag_val=vg
Ok I will post on Biostars later.
Hello dear friends!
Tha…
yeeus updated
1 month ago