phiweger zoo issues - Githubissues

phiweger / zoo

A portable datastructure for rapid prototyping in (viral) bioinformatics (under development).

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issues

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add to zoo destroy also cell delete

#143 flomock opened 7 years ago
0
give option to ignore/skip mismatches in zoo load

#142 flomock opened 7 years ago
0
Show missmatch if zoo load fails

#141 flomock opened 7 years ago
0
added hash, _id and host to header while building .json

#140 flomock closed 7 years ago
1
Seq-sequence missmatch

#139 flomock opened 7 years ago
0
how does schema work?

#138 flomock opened 7 years ago
0
missing --client

#137 flomock opened 7 years ago
1
zoo schema

#136 phiweger opened 7 years ago
0
edn vs json as format to shuttle data around

#135 phiweger opened 7 years ago
0
zoo validate

#134 phiweger opened 7 years ago
2
use case: influenza titer

#133 phiweger opened 7 years ago
0
minor change to examples for zoo init --help

#132 flomock closed 7 years ago
0
some changes to CLI

#131 flomock closed 7 years ago
2
expand zoo --status useability

#130 flomock opened 7 years ago
1
sequence hypothesis as a graph

#129 phiweger opened 7 years ago
0
support variant graphs

#128 phiweger opened 7 years ago
3
content based hash for JSON records

#127 phiweger closed 7 years ago
1
design: uncouple sequence data and metadata

#126 phiweger opened 7 years ago
0
convergence

#125 phiweger opened 7 years ago
0
dat/ IPFS registry again

#124 phiweger opened 7 years ago
0
IPFS cluster as test

#123 phiweger opened 7 years ago
0
IPFS for "fast changing databases"

#122 phiweger opened 7 years ago
0
_id of document: make this the content hash (IPFS address/ link)?

#121 phiweger opened 7 years ago
0
zoo load "--db" inconsistent API

#120 phiweger closed 7 years ago
0
zoo diff

#119 phiweger opened 7 years ago
0
zoo checkout

#118 phiweger opened 7 years ago
0
tree digest

#117 phiweger opened 7 years ago
0
sourmash v2 breaks stuff

#116 phiweger closed 7 years ago
2
check how well we integrate w/ jq (especially piping)

#115 phiweger opened 7 years ago
0
electron desktop app for data entry

#114 phiweger opened 7 years ago
0
gff3 + fasta to json

#113 phiweger opened 7 years ago
0
update sourmash to masterbranch

#112 phiweger opened 7 years ago
0
registry metadata

#111 phiweger opened 7 years ago
0
meeting jena

#110 phiweger opened 7 years ago
0
zoo merge

#109 phiweger opened 7 years ago
0
zoo status

#108 phiweger opened 7 years ago
0
uuid collision secure?

#107 phiweger closed 7 years ago
0
turn `--db x --cell y` into `--cell x.y`

#106 phiweger opened 7 years ago
0
zoo query

#105 phiweger closed 7 years ago
1
create a Redis backend to store/ query an SBT

#104 phiweger opened 7 years ago
0
translate schema fragments into objects

#103 phiweger opened 7 years ago
0
zoo sample ... | zoo dump --fmt fasta ...

#102 phiweger opened 7 years ago
0
variant calling

#101 phiweger opened 7 years ago
0
use case: plum pox virus

#100 phiweger closed 7 years ago
0
sbt combine

#99 phiweger opened 7 years ago
0
date and location representation in mongodb

#98 phiweger opened 7 years ago
0
global variable access CLI/ click

#97 phiweger opened 7 years ago
0
write func that turns data/geo into mongodb obj on import

#96 phiweger opened 7 years ago
0
zoo pull: don't use md5 anymore

#95 phiweger opened 7 years ago
1
zoo status is what goes onto the registry

#94 phiweger opened 7 years ago
1