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phiweger
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zoo
A portable datastructure for rapid prototyping in (viral) bioinformatics (under development).
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zoo load accept text queries
#93
phiweger
opened
7 years ago
3
zoo load handle out/ stdout more elegantly
#92
phiweger
opened
7 years ago
0
all informative print to stderr
#91
phiweger
opened
7 years ago
0
Bio.SeqRecord to/ from JSON conversion
#90
phiweger
opened
7 years ago
0
zoo load: generalize
#89
phiweger
opened
7 years ago
0
zoo load time out
#88
phiweger
opened
7 years ago
0
use case (major): Ebola
#87
phiweger
opened
7 years ago
0
zoo load: still queries with GI numbers, bad
#86
phiweger
opened
7 years ago
3
zoo load add --query arg
#85
phiweger
opened
7 years ago
2
geo: lat long data from nextstrain/fauna
#84
phiweger
closed
7 years ago
0
from zoo.specific import construct_nomenclature_iav
#83
phiweger
opened
7 years ago
0
wiki: working w/ documents
#82
phiweger
opened
7 years ago
0
Tox does not support inline comments
#81
luizirber
closed
7 years ago
1
tutorial CLI
#80
phiweger
opened
7 years ago
0
zoo scale
#79
phiweger
opened
7 years ago
0
zoo load --ncbi accessions.txt | zoo init --db x --cell y | zoo dump --tofasta ...
#78
phiweger
opened
7 years ago
1
structure directory .zoo
#77
phiweger
opened
7 years ago
0
dat delete behaviour
#76
phiweger
opened
7 years ago
1
for large test data, use figshare
#75
phiweger
opened
7 years ago
0
dotmap, dotobject, node (f.k.a. zodict)
#74
phiweger
opened
7 years ago
1
redis?
#73
phiweger
opened
7 years ago
1
wiki: update "working with schemas"
#72
phiweger
closed
7 years ago
1
call diff with zoo commit if --version-control flag put (or --vc)
#71
phiweger
opened
7 years ago
1
apply diff
#70
phiweger
opened
7 years ago
4
datapackage spec
#69
phiweger
opened
7 years ago
0
zoo --query JSON
#68
phiweger
closed
7 years ago
1
zoo sbt_index --key w/ spaces?
#67
phiweger
opened
7 years ago
0
containerize
#66
phiweger
opened
7 years ago
2
use case: EVEs
#65
phiweger
opened
7 years ago
1
schema: validation
#64
phiweger
opened
7 years ago
4
data versioning and decay
#63
phiweger
opened
7 years ago
4
rename cell a, b, c into sth more memorable
#62
phiweger
opened
7 years ago
0
put SBT files in .zoo
#61
phiweger
opened
7 years ago
0
specify file extensions or not? unify behaviour.
#60
phiweger
opened
7 years ago
0
add -m flag to zoo commit and store git-like in metadata file or .zoo
#59
phiweger
opened
7 years ago
1
large sequences
#58
phiweger
opened
7 years ago
1
_id == md5 hash of content?
#57
phiweger
closed
7 years ago
2
test: hashing for zoo pull command
#56
phiweger
opened
7 years ago
0
figures: msa w/ colours
#55
phiweger
opened
7 years ago
0
tox not working
#54
phiweger
closed
7 years ago
0
consistent location parsing
#53
phiweger
closed
7 years ago
2
API
#52
phiweger
closed
7 years ago
4
functions that control what (collections/ fields) get exported
#51
phiweger
opened
7 years ago
0
allow SNP calling/ "dynamic sites"
#50
phiweger
opened
7 years ago
0
test dataset
#49
phiweger
opened
7 years ago
2
wiki: merge "work with {documents, schemas}" into one article
#48
phiweger
opened
7 years ago
0
upon thesis completion wil turn v1.0
#47
phiweger
opened
7 years ago
0
documentation read the docs
#46
phiweger
opened
7 years ago
0
get DOI (Zenodo)
#45
phiweger
closed
7 years ago
0
include coverage/ CI (travis?)
#44
phiweger
opened
7 years ago
0
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