issues
search
phiweger
/
zoo
A portable datastructure for rapid prototyping in (viral) bioinformatics (under development).
5
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
use case: get non-coding region 5' and 3'
#43
phiweger
opened
7 years ago
0
wiki: manipulating nested objects
#42
phiweger
closed
7 years ago
0
2 x deep_set
#41
phiweger
closed
7 years ago
0
tests deep_get, deep_set
#40
phiweger
closed
7 years ago
0
move examples to wiki at some point
#39
phiweger
opened
7 years ago
0
update schema comments (.md files)
#38
phiweger
closed
7 years ago
0
deep_set() function
#37
phiweger
closed
7 years ago
2
maintain a table w/ geolocation for all places encounted in viral records
#36
phiweger
opened
7 years ago
0
use case: ML with influenza
#35
phiweger
opened
7 years ago
0
create 3 main databases and make dat links available
#34
phiweger
opened
7 years ago
0
use case SBT: identify reassortment (context: Swine flu)
#33
phiweger
opened
7 years ago
0
tree = SBT(factory, d=2) # investigate d
#32
phiweger
opened
7 years ago
0
slim down DotMap fork
#31
phiweger
closed
7 years ago
1
refactor: zoo.utils.iter_seq()
#30
phiweger
opened
7 years ago
1
gap notation
#29
phiweger
opened
7 years ago
0
use case: segmented virus (linked record), cross-collection work: relation to flavivirus (sample, tree construction)
#28
phiweger
opened
7 years ago
2
alignment functionalities
#27
phiweger
opened
7 years ago
0
traverse segmented virus/ assembly graph
#26
phiweger
opened
7 years ago
1
create wiki
#25
phiweger
opened
7 years ago
0
integration w/ containerized workflows
#24
phiweger
opened
7 years ago
0
command line interface
#23
phiweger
closed
7 years ago
0
licence
#22
phiweger
closed
7 years ago
3
review 3rd party code for access to ENA
#21
phiweger
opened
7 years ago
0
schema: include ENA domains?
#20
phiweger
opened
7 years ago
0
use case: John Snow
#19
phiweger
opened
7 years ago
1
(bottom-k) minhash just one type of supported sequence "derivative"
#18
phiweger
opened
7 years ago
0
focus
#17
phiweger
opened
7 years ago
0
use case: metagenomics
#16
phiweger
opened
7 years ago
2
sequence objects
#15
phiweger
opened
7 years ago
0
interface
#14
phiweger
opened
7 years ago
0
include titer data for influenza
#13
phiweger
opened
7 years ago
0
country to long, lat
#12
phiweger
closed
7 years ago
0
zoo engine vs. data
#11
phiweger
closed
7 years ago
0
multiple schemes
#10
phiweger
closed
7 years ago
0
add downstream ml script
#9
phiweger
closed
7 years ago
0
turn into properly pip-able package
#8
phiweger
closed
7 years ago
0
sharing of data, dat, registry
#7
phiweger
closed
7 years ago
8
UUID as _id in mongoDB
#6
phiweger
closed
7 years ago
2
integrate ViRAD annotation data
#5
phiweger
closed
7 years ago
0
write proper test suite including continuous integration
#4
phiweger
closed
7 years ago
0
integrate GLUE MSA traversal
#3
phiweger
closed
7 years ago
2
wrap ENA interface
#2
phiweger
closed
7 years ago
2
create SBT from collections/ document sets
#1
phiweger
closed
7 years ago
1
Previous