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Improve the antibiotic and carbon source's input on the YAML file. Currently, it is only a true/false field, but we should capture much more information about it. For the moment, set it as text file t…
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Hi all,
We are trying to get this pipeline working with the included control dataset so we can use it to characterize a variety of novel bacteriophages that we think may be circularly permuted with…
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I read your paper with great interest: Hugerth, L.W., Krog, M.C., Vomstein, K. et al. Defining Vaginal Community Dynamics: daily microbiome transitions, the role of menstruation, bacteriophages, and b…
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### Synthetic circuits integrating logic and memory in living cells
Piro Siuti, John Yazbek & Timothy K Lu (2013)
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**Global summary:**
- Strategy for building synthetic logic circu…
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Hey,
Thank you for creating and sharing such an important program. I am running into issues with dependencies on my R environment using my university cluster. I see that you specify BiocManager 3.1…
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In rare cases, multiple DOIs have been assigned to the same content accidentially. In these cases we ask the corresponding publisher to alias both DOIs to each other, see http://help.crossref.org/forc…
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## Artificial cell-cell communication as an emerging tool in synthetic biology applications
https://jbioleng.biomedcentral.com/articles/10.1186/s13036-015-0011-2
This article is a review on the di…
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Thank you very much for providing the PhaGCN2.2 tool! I encountered some errors during use and would like to ask for your assistance.
I input a bacteriophage with a length of 39,048 bp, which is gr…
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Hi,
Congratulations on the PhageScope article and thank you for establishing a much-needed extensive database. I have a few queries:
1. The article mentions that sequences were searched in the res…
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Hi Sam,
thanks for sharing your code on GitHub. Your scripts work smoothly. I was just wondering if you were planing to update your merge.py script to process the updated COG2020 database file format…