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Whenever I run approx. > 200 jobs on our SGE cluster, I get the following error:
```
BatchtoolsExpiration: Future ('') expired (registry path /ebio/abt3_projects/software/dev/DeepMAsED/notebooks/0…
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## Summary
When I supply a `resources` list to a `batchtools` future, the resources seem to be ignored. I was alerted to this via `targets`, https://github.com/ropensci/targets/discussions/562#disc…
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I have recently discovered [ClusterMQ](https://github.com/mschubert/clustermq) which can run R code in SLURM/LSF/etc. jobs. The biggest advantage over batchtools is it uses ZMQ to transfer data direct…
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I have forked batchtools and I have made some changes in order to fully work with our Cluster environment. Although I can not get it to change name. I want to load it as batchtools_cc to differentiate…
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I've just tried to run a new batch of exomes through the copy number pipeline, and have encountered a new error while running 1.mpileup.R.
Almost all of the mpileup files for each sample + chromoso…
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With future.batchtools and other wrappers, it become a bit tricky to track down where errors are coming from when running in batch mode. For instance, I got some:
```
Error : BatchtoolsError in Bat…
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Hello! I recently posted an [issue](https://github.com/HenrikBengtsson/future.batchtools/issues/24#issuecomment-401415436) on the [future.batchtools](https://github.com/HenrikBengtsson/future.batchtoo…
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Ref: https://github.com/HenrikBengtsson/future.batchtools/issues/36
I and others are finding that the job-submission rate when using batchtools via future.batchtools can be quite slow.
Is it fea…
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Thanks for the great package.
We are converting a makeflow workflow to R using `targets` + `batchtools`, for a SLURM system.
However, we find practically unusable because the job that fail do no…
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I'm trying to use future.batchtools with a SLURM system that heavily suggests using array jobs: e.g. makeClusterFunctionsSlurm(...,array.jobs=T) but I can't seem to figure out how to pass that option …