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Hi Victor,
I know it has been a while, I am trying to run the script in -
/ufrc/zhou/share/projects/bioinformatics/p53/P53_ChIPSeq_Anno/scripts/P53_ChIPSeq_Anno.py
It does not give me an error…
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Using braker 2.1.6 - In output file `augustus.hints.gff3` the score of a `gene` feature appears to be the sum of the scores of the mRNAs of that gene. For example, here it is 1.9 (1 + 0.9):
```
gr…
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Thanks for contributing these phyloseq tools.
I'm wondering if we could integrate these tools into the IUC repository: https://github.com/galaxyproject/tools-iuc/blob/master/tools/phyloseq/?
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Hi,
I encountered the following error message when trying to run UMIc:
Could you suggest a way to troubleshoot? Thanks!
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### Lesson Title
Snakemake for Bioinformatics
### Lesson Repository URL
https://github.com/carpentries-incubator/snakemake-novice-bioinformatics
### Lesson Website URL
https://carpentries-incubat…
gperu updated
2 months ago
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@ShreyasDasari the length of the introns is incorrect. Please note that both the start and the end coordinates are on the exon. So the intron length is one less that what you computed. Please fix it. …
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Implement a WDL task and evaluate the use of the noise-cancelling repeat finder (NCRF). From the manuscript (https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btz484/…
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Refgenie looks like a great project that solves a very important problem in production bioinformatics work. Coworkers have given it great reviews. I would love to adopt it to manage a bunch of genomes…
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Hi there,
This is a semi-automated message from a fellow bioinformatician. Through a GitHub search, I found that the following source files make use of BLAST's `-max_target_seqs` parameter:
- [exam…
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Hi Mr. Long,
Thanks for the exciting and elegant pipeline for UCE hunt.
I am 2/3 on the way to finish following the workflow. So far very good.
Just wondering what perl script you use for the maf2…