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This is more of a question than an issue but in bioinformatics there's growing momentum behind the use of workflow managers to run pipelines like you're got here. Here are some examples:
- https://…
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Hi,
I aligned my trimmed fastq using STAR, and I got a very low uniquely mapped reads %, all of my samples ranged around 40%. and then we checked back, from our fastqc results, we found that there…
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hi - thanks for writing this pipeline and I am looking forward to using it. I ran the install.sh script and produced the following error message:
python: can't open file 'setup.py': [Errno 2] No such…
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This issue asks for a review of the current documentation surrounding nextstrain from those with background in this area. This review could touch on overall layout, linking between sections, and conte…
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In the Nature Methods paper it suggests it would be possible to include covariates in the scLVM procedure but I don't think it is fully implemented yet in the [gp_clvm function](https://github.com/PMB…
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NCL http://ncl.sourceforge.net/ is the standard implementation for Nexus parsing. Can we integrate this with BEAST? What are the issues?
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Great to see the community coming together. I would like a quick introduction of everyone so we know who is who and where to find each other beyond this Github rep.
To start off:
I'm Chantal Huijb…
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When running
`./gimli.sh annotate JNLPBA -c JNLPBA-test.gz -o output.txt -m protein.gz,protein,fw,jnlpba_protein.config`
after creating `JNLPBA-test.gz` and `protein.gz` from the JNLPBA data distrib…
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http://rosalind.info/problems/locations/
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Project Lead: @Lilian9
Mentor: @kipkurui
Welcome to OLS-1! This issue will be used to track your project and progress during the program. Please use this checklist over the next few weeks as you s…