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Hi! I am using blobtools 1.1.1 installed with miniconda. I followed the instructions to install the nodesdb and no file is generated using blobtools nodesdb. Any idea what I am doing wrong?
Thank…
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Hi,
I was running the command line to add hits into my blobtoolkit file (command just below) but the run fail and end with an error.
Could you help me identify the problem?
I installed the blobto…
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Hey All
I am taxify-ing the blast output file against Uniprot database, following the tutorial here- https://blobtools.readme.io/docs/taxid-mapping-file.
The accessions file looks like this-
A4…
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In the flowchart depicting the pipeline used by CCGP for genome assembly, there is a line connecting the 'Contamination Screening: BlobToolKit' box to the 'ARIMA Mapping Pipeline' box. This suggests t…
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Hello,
I have been trying to add my BLAST and DIAMOND outputs to the blobtools directory, but I have been failing to add any of the two.
I get the following error:
```
Traceback (most recent …
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Hi, I am trying to filter a blobdir based on identifiers.
From the documentation I got that this would simply need a text file with the wanted identifiers separated by spaces or newlines.
But th…
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Hello,
I have created a BlobDir and have previously been able to access the viewer without any problems. Now every time I try to do this I get the following error in the browser:
Unable to connect…
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Hello!
I have problems using the viewer function. Is it possible to generate plot remotely as with "blobtools plot" in the first version of blobtools?
Thanks!
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Hi there, I am having trouble to build blobtoolkit directly from the sources myself and would like to suggest to add instructions on how to do this if possible.
This is the behavior I am observing…
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Hi,
I'm using blobtools version 1.1.1 and running this command on the example:
blobtools create -i example/assembly.fna -b example/mapping_1.sorted.bam -t example/blast.out -o example/test --nodes …
ginac updated
3 years ago