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Hi @ctb ,
Currently I'm using these commands:
# Prepare data
```
cd /mnt/data/tnmquann/benchmarking/12_experiment
# Step 1: sourmash manysketch
sourmash scripts manysketch manysketch.csv -o many…
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Question from stamps attendee Gabri (@mrgambero):
> is there a script to turn sourmash gather results csvs into an R dataframe with a column for each of your samples?
this code definitely exists s…
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based on some of the results for the new long-read benchmarking paper Portik et al. ([link](https://www.biorxiv.org/content/10.1101/2022.01.31.478527v1) - not yet updated), @bluegenes and I were discu…
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It would be nice to have some basic tests hooked into Travis to test the following things:
- [ ] the package builds correctly
- [ ] the API methods do what they're supposed to do correctly (full …
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With the merge of `StandaloneManifestIndex` https://github.com/sourmash-bio/sourmash/pull/1891 and `sourmash sig check` https://github.com/sourmash-bio/sourmash/pull/1907, and the advent of `sourmash …
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**Submitting author:** @bluegenes (N. Tessa Pierce-Ward)
**Repository:** https://github.com/sourmash-bio/sourmash
**Branch with paper.md** (empty if default branch):
**Version:** v4.8.9
**Editor:** @…
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**Submitting Author:** Tessa Pierce-Ward (@bluegenes)
**All current maintainers:** @ctb, @luizirber, @bluegenes
**Package Name:** sourmash
**One-Line Description of Package:** `sourmash` is a comma…
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Hi Titus,
I am using lca gather to quantify the abundance of a set number of reference genomes I have in a panel of metagenomic datasets (fastq reads). I am then extracting the "f_unique_weighted" …
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Submitting Author: Moritz E. Beber (@Midnighter)
All current maintainers: (@Midnighter, @sofstam, @jfy133)
Package Name: taxpasta
One-Line Description of Package: TAXonomic Profile Aggregation and …