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I'm reading the code and the paper (highres3dnet_brain_parcellation) and I can't find what anatomical parcellation corresponds to each class.
It would be great if there was a description for each cl…
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v18 (has the current hierarchy of the brain areas stated in the "ontology" JSON):
Amunts, K., Eickhoff, S. B., Caspers, S., Bludau, S., & Mohlberg, H. (2019). Whole-brain parcellation of the JuBrain …
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There are a number of brain parcellation schemes that we want to ingest into the ontology. Allen MBA and cocomac have been ingested (though cocomac has not been fully integrated into the ontology), bu…
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Are the Schaefer labels/parcels updated according to https://github.com/ThomasYeoLab/CBIG/blob/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/Updates/Update_20190916_…
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Dear Sebenius,
I apologize for any inconvenience caused by reaching out to you. I am currently encountering an issue with retrieving cortical thickness values for each vertex within every brain regio…
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Integrate different parcelations to plot inter-brain connectivity.
Example:
![sphx_glr_parcellation_003](https://user-images.githubusercontent.com/208779/176714170-5f5f6df3-0cff-4447-a08d-c0d204d9…
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It should be possible to launch the viewer via URL scheme given one of
- a coordinate location
- a brain region
- a parcellation map
- a space (-> open template)
- a bounding box
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I recently upgraded from Ubuntu 18 to 20, and updated my NVIDIA drivers to 460.39, and now pysurfer is not displaying parcellations and labels correctly anymore. From certain angles, the parcellation …
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run main_data_generation.py occurred error:
./datasets/miccai/2/mri/1004_3.nii
Traceback (most recent call last):
File "main_data_generation.py", line 16, in
generate_and_save(data_c…
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Hi,
I found the affiliation very strange, and different from https://github.com/PennLINC/xcpEngine/blob/master/atlas/schaefer200x7/schaefer200x7CommunityAffiliation.1D
Similar difference also e…