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I'd like for those of us who will probably be doing more yacking and less hacking to consider how we might commonize our databases, metadata and ontologies. My proposed agenda is to grab as much low-h…
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Hi,
I'm using ISAcreator 1.7.11 on ubuntu (unpacked from zip file downloaded from https://github.com/ISA-tools/ISAcreator/releases).
It works fine, but "ontology search" in "Study Design Type" for…
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As a followup to issue #77 and #36, after ontologies.json, methods.json, and traits.json are approved, finish these steps:
- [ ] review api/observationunits.py and figure out how to read in ontolog…
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@LlorencCB
The following concepts where used by PHIS and are no longer available.
Quality : environment feature & trait
http://purl.org/ppeo/PPEO.owl#PPEO_000010
http://purl.org/ppeo/PPEO.owl#PP…
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https://github.com/plantbreeding/API/blob/d676187253e952648b68953b2486a66ff75e98e1/Specification/BrAPI-Phenotyping/ObservationUnits/Schemas/ObservationUnitSearchRequest.yaml#L16
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following https://github.com/genophenoenvo/terraref-datasets/issues/9 where variables were annotated w/ ontology terms in [this spreadsheet](https://docs.google.com/spreadsheets/d/1o13Gy0p6-1ncgWwZ_QN…
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https://github.com/plantbreeding/API/blob/d676187253e952648b68953b2486a66ff75e98e1/Specification/BrAPI-Phenotyping/ObservationUnits/Schemas/ObservationUnitNewRequest.yaml#L44
In the current version…
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https://github.com/plantbreeding/API/blob/eae9433880153c7d0f87509126a9fd72800b9bec/Specification/BrAPI-Germplasm/Germplasm_Attributes/Schemas/VariableBaseClass.yaml#L1
AND here :
API/Specificatio…
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/programs
/programs/{programDbId]
/programs/{programDbId]/trials
/programs/{programDbId]/trials/{trialDbId}
/programs/{programDbId]/trials/{trialDbId}/studies
/programs/{programDbId]/trials/{tria…
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Based on the isa configuration files and example isa-tab files generated by the brapi 2 isa script, following issues with the isa validator were detected:
## Warnings in the study file:
```json
…