issues
search
genophenoenvo
/
terraref-datasets
Repository for code and small datasets derived from the TERRA REF program
MIT License
0
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Finish Sorghum logistic growth refactoring
#137
jessicaguo
closed
2 years ago
2
Re-factor sorghum logistic growth
#136
jessicaguo
closed
2 years ago
1
Debug logistic growth models
#135
jessicaguo
opened
3 years ago
1
Review ML manuscript
#134
KristinaRiemer
closed
3 years ago
0
Exploratory data analysis of phenophase data
#133
jessicaguo
closed
3 years ago
0
Document Emily's code
#132
jessicaguo
closed
3 years ago
1
PEG documentation, refactor python notebooks
#131
jessicaguo
closed
3 years ago
1
Excessive removal of canopy heights from mac season 4
#130
jessicaguo
closed
3 years ago
4
Check KSU days to flowering dataset
#129
dlebauer
opened
3 years ago
1
Run JAGS model and provision results to PEG collaborators
#128
jessicaguo
closed
3 years ago
3
Generalize and test JAGS logistic regression
#127
jessicaguo
closed
3 years ago
3
JAGS model equivalent for logistic growth RE model
#126
jessicaguo
closed
3 years ago
1
JAGS model estimation of logistic growth parameters
#125
jessicaguo
closed
3 years ago
0
Incorporate David's suggestions into README pull request
#124
MagicMilly
closed
3 years ago
2
Remove canopy_height data collected before May 15 from season 6
#123
dlebauer
closed
3 years ago
0
Updated data cleaning notebooks
#122
MagicMilly
closed
3 years ago
2
Add script to annotate vep with go terms
#121
kshefchek
closed
3 years ago
0
Generate table of VEP gene hits and GO terms for each cultivar
#120
kshefchek
opened
3 years ago
5
Add README
#119
MagicMilly
closed
3 years ago
2
script to clean terra-ref weather data
#118
MagicMilly
closed
3 years ago
0
Modify NEON table with column names and download from R package
#117
MagicMilly
closed
3 years ago
3
Wrap Up TERRA-REF data curation with data, cleaning code, and README in one location
#116
MagicMilly
closed
3 years ago
0
Prepare demo for TRIPODS-HDR workshop
#115
KristinaRiemer
closed
3 years ago
3
Complete README for TERRA-REF trait data
#114
MagicMilly
closed
3 years ago
3
Incorporate feedback to modify weather cleaning script
#113
MagicMilly
closed
3 years ago
0
Refactor canopy_height vs. gdd model to be functional modeling
#112
rbartelme
closed
3 years ago
1
Update input data in all terra-ref cleaning notebooks
#111
MagicMilly
closed
3 years ago
2
Add script for cleaning soil data
#110
MagicMilly
closed
3 years ago
2
Convert one python notebook to script
#109
MagicMilly
closed
3 years ago
9
Sorghum VPD covariate winnowing
#108
rbartelme
closed
3 years ago
5
Sorghum bicolor modeling: height vs. gdd
#107
rbartelme
closed
3 years ago
4
fix tall trait data date format and populate NA weather data dates
#106
rbartelme
closed
3 years ago
9
Follow-up action items for NPN days to flowering data for Populus nigra
#105
MagicMilly
closed
4 years ago
2
Schedule and meet with Tyson to move notebooks
#104
MagicMilly
closed
4 years ago
1
Complete PR by adding description of linked ontology
#103
MagicMilly
closed
3 years ago
3
Incorporate David's feedback for Dryad data upload to CyVerse
#102
MagicMilly
opened
4 years ago
3
Reformat weather data for all seasons
#101
MagicMilly
closed
4 years ago
4
Create tall format derived datasets from all seasons
#100
MagicMilly
closed
4 years ago
7
Flesh out soil-data README
#99
MagicMilly
closed
4 years ago
2
Upload Dryad data with citation to CyVerse
#98
MagicMilly
closed
4 years ago
5
Next steps for adding linked ontology as metadata data to project sorghum data
#97
MagicMilly
closed
4 years ago
2
Search NPN for Days and GDD to Flowering
#96
MagicMilly
closed
4 years ago
3
Create prototype of data table from downloaded NEON plant community composition and phenology data
#95
MagicMilly
closed
3 years ago
17
Define requirements for SQL script (NEON data)
#94
MagicMilly
closed
4 years ago
1
Transfer data and notebooks from personal repo to GenoPhenoEnvo / CyVerse
#93
MagicMilly
closed
4 years ago
5
Add ontologies, methods, and traits json files after PR is approved to BrAPI
#92
MagicMilly
closed
3 years ago
5
Update cleaning notebook, derived datasets, and README with Season 6 Dryad data in GitHub Repo
#91
MagicMilly
closed
4 years ago
4
Refactor code for cleaning soil data
#90
MagicMilly
closed
4 years ago
4
Use Dryad data for Seasons 4 and 6
#89
MagicMilly
closed
4 years ago
1
Use new Pull Request template for soil data branch
#88
MagicMilly
closed
4 years ago
2
Next