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Hi,
first of all, thank you for publishing your work and the corresponding code!
I run into an error by using ```--device cpu```
```
INFO:root:Loading weights from /mnt/home/user/.cache/ome…
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Dear Alphafold Team!
Sincerely sorry to reach out this way. I'm a researcher at MIT CSAIL and currently working on a project that hopes to examine computing power used in CASPs. I've tried many met…
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I'm trying to replicate QDeep using the dataset provided in the input_tar.gz file. However, in the CASP 13 stage 2 dataset that included in the input_tar.gz file, only predicted labels are available w…
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This is a bit old issue but in the hmm profile extraction function in alphafold_casp13/README.md, all of the values are calculated using the formula
2**(-float(t) / 1000.)
```python
def extract_hm…
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- I want use casp13 dataset.
- And i want use covid-13 protein pdb file.(In this project)
- Please give me solutions.
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Hello, I am a developer who is currently using the "alphafold_casp13 project".
I have some questions. Can you help me this problem.
- Now i using casp13 data. "output rr file" on contacts folder.
…
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this is the link to the file: https://github.com/geet2019/deepmind-research/tree/master/alphafold_casp13 how can I download the dataset and where I can save it.
https://github.com/geet2019/deepmin…
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- How can I get the .tfrec files from the pdb file?
- I want to get tfrec file.(on pdb file)
- Please give me solutions.
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- Do you not support other protein besides casp13 dataset?
- I want to use covid 19 protein(SARS-CoV-2) on alphafold_casp13 project. Does not support it?
- Give me the solutions please.
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- Now i test the alphafold_casp13 project.
- Now i don't understand crop the sequence. ( Why crop the sequence?)
- Can you teach me the reason?( I want to know this issue)