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HeliXonProtein
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OmegaFold
OmegaFold Release Code
Apache License 2.0
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Google collab error
#74
irinasspider
opened
5 months ago
6
Difference between model 1 and 2
#73
mcn3159
opened
5 months ago
1
Next Omegafold
#72
smilenaderi
opened
6 months ago
3
Geoformer implementation is different from EdgeAttention described in paper
#71
jimmieliu
opened
7 months ago
0
Exporting model to ONNX format
#70
pauldog
opened
8 months ago
0
Exception: Python 3.11.4 (tags/v3.11.4:d2340ef, Jun 7 2023, 05:45:37) [MSC v.1934 64 bit (AMD64)] is not supported.
#69
Herutriana44
opened
9 months ago
4
ModuleNotFoundError: No module named 'torch'
#68
ana1878
opened
11 months ago
0
Model 2 error
#67
vvishwesh
opened
1 year ago
1
CUDA error: unknown error
#66
puddleglum56
opened
1 year ago
0
Why does the edges produced in OmegaPLM become shape (PLM_layers, n , n) instead of (Layers, batch size, n , n)
#65
WBennett003
opened
1 year ago
0
Model 2 subbatch_size not working
#64
smilenaderi
opened
1 year ago
3
Broken prolines ?
#63
Lotirador
opened
1 year ago
0
Issues with running model2
#62
s-kyungyong
opened
1 year ago
1
OmegaFold - Masking specific residues in input FASTA?
#61
amorehead
opened
1 year ago
0
Can omegaFold be used to predict the composite structure of the heavy and light chains of the antibody
#60
Licko0909
opened
1 year ago
0
About the possibility of creating decoys (low quality models)
#59
imabio
opened
1 year ago
0
2nd model release - is 7KPJ part of the train set in this model ?
#58
YoelShoshan
opened
1 year ago
0
where is 3DPorjection function implemented in the ./decoder/StructureModule?
#57
Kewei2023
opened
1 year ago
0
udpate model2
#56
RuiWang1998
closed
1 year ago
0
Where can I find the confidence value of a Prediction on Omegafold ?
#55
PierrePaillard
opened
1 year ago
2
OSError: libcudnn.so.8: cannot open shared object file: No such file or directory
#54
charlesdavid
opened
1 year ago
0
libcupti.so.11.2: cannot open shared object file
#53
biotech70
opened
1 year ago
0
SubBatching
#52
YoelShoshan
opened
1 year ago
0
Parameters Initialization
#51
YoelShoshan
opened
1 year ago
0
When running on https://biolib.com/protein-tools/omegafold/ with a fasta file, this error showed up
#50
Jeffery-Ni
closed
1 year ago
1
Some questions about model training
#49
WangHuiNEU
opened
1 year ago
1
OOM issue when working with gradient
#48
WANG-CR
opened
1 year ago
1
Training Code Availability
#47
YoelShoshan
closed
1 year ago
1
Confidence metric
#46
Geraldene
closed
1 year ago
4
Reproducing Antibodies/Orphans results
#45
benoitgaujac
opened
1 year ago
0
Will there be OmegaFold_Multimer?
#44
DaHenz
opened
1 year ago
4
Help with Install
#43
joonp9
closed
1 year ago
0
device option
#42
rmarabini
opened
1 year ago
1
output x best models
#41
FlorianWieser1
opened
1 year ago
1
A100 VS A40 performance issue
#40
truatpasteurdotfr
opened
1 year ago
2
output plddt?
#39
pengzhangzhi
closed
1 year ago
1
In-Place Softmax Breaks AutoDiff
#38
countrsignal
closed
1 year ago
5
RuntimeError: CUDA out of memory.
#37
biotech70
closed
1 year ago
1
'Unsupported datatype for constant' when trying to run on a M1 Pro
#36
cdsnow
opened
1 year ago
5
Fix for older versions of pytorch
#35
jnooree
closed
1 year ago
3
pseudo MSAs in OmegaPLM
#34
BSharmi
closed
1 year ago
1
Installing OmegaFold in Ubuntu v22.04
#33
biotech70
opened
1 year ago
3
Motif & sub-sequence masking
#32
CatIIIIIIII
opened
1 year ago
0
Reproducing CASP results
#31
lhatsk
opened
1 year ago
1
Training code
#30
lhatsk
closed
1 year ago
1
License for weight parameter file
#29
xvtyzn
opened
1 year ago
0
Out of memory for the training of 1 layer of GeometricAttention
#28
Zhang038
opened
1 year ago
0
fixed an import exception in pipeline.py
#27
hazemessamm
closed
1 year ago
1
fixed an import exception in pipeline.py
#26
hazemessamm
closed
1 year ago
0
adding support for multimers via residue_index hack
#25
sokrypton
opened
1 year ago
9
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