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In the vein of trying to provide concrete use cases, I thought I'd capture something on github that I knew we'd eventually want. A subset of http://www.ebi.ac.uk/cmpo/CMPO_0000309 might work:
![scre…
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https://link.springer.com/content/pdf/10.1007/s10875-022-01289-3.pdf
Can we use this as the backbone for the MONDO classification of these diseases?
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Of course dependent on #1383, and pursuant from #1317, below is a distillation of high priority improvements in order of importance:
## Faceting by result type:
- [x] Gene*
- [x] Disease\*
- [x] …
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There are a number of tumor predisposing syndromes, some cancerous, others benign. These are often represented in the syndrome branch but not the 'disease of cellular proliferation' branch, where clin…
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### Module Overview
This module aims to find genes predicted to impact a known feature or mechanism of the disease. It requires condition-specific knowledge and access to relevant datasets. The refe…
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need to decide how to standardize these types (now we can query on conditions)
We have quite a discrepancy for this one.
I did not look for others...
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I see the following GO terms related to "protection".
GO:0090519: anoxia protection
GO:0009650: UV protection
GO:0042262: DNA protection
~GO:0048478: replication fork protection~ >>> see https:/…
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To create a common 'look and feel' for browsing phenotype ontologies, we would like to start thinking about what kind of standard upper-level distinctions we can recommend for phenotype concepts. [Her…
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suggest to obsolete both
GO:0000752 | agglutination involved in conjugation with cellular fusion | IMP |
see https://github.com/geneontology/go-annotation/issues/3194
GO:0000749 | response t…
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### New Edge Metadata
I am hoping to add two types of relation-specific metadata to the statistics that are currently generated with each KG build: (i) relation types and (ii) relation patterns. A br…