-
We have a user who tried to copy a directory on rhino to S3.
There were two files in the directory that had owner read permissions but no group read permissions (and this user is in the group but is…
-
hi,
my data is cfDNA data from target panel sequencing with high coverage .
so Pisces is Ok for my data to call somatic mutation with tumor only sample ??
thank you in advance !
-
I am running ichorcna as a tool to analyze my cfDNA data WGS. I do have an issue. One of the further analysis I would like to perform is to run GISTIC to get a bit more information on the data, and I …
-
hello
--maxFracCNASubclone=MAXFRACCNASUBCLONE
Exclude solutions with fraction of subclonal events greater than this value. Default: [0.7]
The Frac. CNA Subclonal: 0.99 of my result is …
-
Hi, I spotted this repo and I was wondering if there is any documentation on the underlying algorithm. What's the rationale for this deduplication method to be optimized for cfDNA? Thanks in advance.
-
Hello ichorCNA team! I'd like to know if your softwar can also be used to analyze shallow whole genome sequencing data comming from tumor tissue samples (not cfDNA but solid samples of the actual tumo…
-
Hello Devon!
I was wondering if you had plans to implement a per-fragment methylation tool for MethylDackel. The problem with the per-read methylation is it doesn't take into account information on…
-
hello, I am interested in your code. but can you provide datasets?
thank you very much!
-
Hi!
Thank you for developing these great tools!
I was wondering what would be the recommended way to convert pat files from one genome to another? As far as I am aware there is no designated functio…
-
hello,i'm wondering where to find hg19gcpct data? thanks alot
and my data is a panel data with Tumor and Normal ,can i calculate HRD scores?