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I think it would be good to include the results of this benchmarking paper in the ATAC-seq processing section. It does a quantitative comparison of various libraries in the ecosystem and compares them…
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### BPCells doesn't wok with chromatin assay
I am working with a big multiomics object. I updated Seurat to Version 5, because I need the support of BPcells to avoid breaking R because of the size of…
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# General Notes
This repository serves as a mostly automated p…
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increased chromatin binding at centromere central core
parent: increased chromatin binding
increased histone H4-K12 acetylation at the centromere central core during vegetative growth
-> exists F…
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## patch-seq assay
Label: patch-seq assay
Alternative term(s): patch clamp and RNA sequencing assay
Definition: A single-cell RNA sequencing assay that takes a patch clamp recording from a cell a…
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Hello,
I want to call allele chromatin loops. Does FAN-C call allele chromatin loops?
Best,
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mcm-7
http://amigo.geneontology.org/amigo/reference/PMID:29463814
mcm-7 is used an experimental a tool to create chromatin bridges (chromatin bridges cause chromatin segregation defects, but this…
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We know we are moving forward with RNA-seq, and I think it would be beneficial to rank priorities on other analyses:
Here is a non exhaustive ranked list to start with but would like to get more op…
sr320 updated
2 months ago
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abnormal chromatin binding (FYPO:0002576)
normal chromatin binding (FYPO:0003086)
currently allows
assayed protein
assayed region
Assayed region accepts a SO term, but usually, we don't kn…
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Hi Tanya,
I'm not including TAIR in the rule building process, but If I see any obvious outliers I'll elt you know.
These appear to be indirect for "chromatin remodelling"
HOG1 | AT4G13940 | …