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Hi , I'm following the tuto and got error
```julia
counts = load_counts(sample_paths; sample_names=["P1","P2"])
┌ Warning: ID "CD34" is not unique. Use duplicate_var=x, where x is :error, :warn o…
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Dear DALI team,
Few questions.
1) Can you please provide a link or code on how you built the seuratObj.rds object? It will help us use the app if we can reproduce your your .rds object as well a…
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Dear developers,
After using `setup_sfaira`, I tried to download all human blood-related datasets by running the following command:
```
ds_blood
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The vignettes would benefit a lot from addition of prose from the manuscript that provides context for what the dataset provides and how it can be used. For example, if someone is looking for a datase…
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Dear cellxgene team,
first of all, thank you for developing and maintaining such a nice tool!
I am trying to analyze a citeseq dataset with cellxgene. The difference here is that instead of cells …
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I would like to run Matilda (classification). However I don't have the inputs in .h5 format. I only have gene expression matrix (in .csv), a ADT matrix (in .csv), and labels. Is an easy way to run Mat…
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As we are evaluating integration methods and testing subsets of datasets, it would be helpful to see the exact breakdown of ScPCA projects and how much of each disease, 10X platform, etc. are included…
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Hi all, I have a theory question, not an issue for once. So I have all these seurat clusters from different samples which were merged (no batch effect) and thereby have metadata inherited from their s…
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Hi Aditya @adyprat
Thanks very much for sending the CSV files. I am wondering if it will be feasible to edit the script and integrate only scRNAseq and CODEX only? We want to map those UMAP cluste…
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Hello,
I'm working through the tutorial of Seurat V3. I need to create individual Seurat objects and merging them. This merged Seurat object will be imported to Monocle. The question is whether the…