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waldronlab
/
SingleCellMultiModal
Single Cell multimodal data scripts for downloading datasets
https://bioconductor.org/packages/SingleCellMultiModal
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published paper
#74
drighelli
closed
1 month ago
2
Update citation
#73
lgeistlinger
closed
3 months ago
1
fixing CITEseq bug
#72
drighelli
closed
1 year ago
1
Provide context in vignettes
#71
lwaldron
opened
1 year ago
1
Vignettes not building
#70
lwaldron
closed
1 year ago
7
Citeseq celltypes
#69
drighelli
closed
1 year ago
5
CITEseq MAE to SCE conversion improvements
#68
drighelli
closed
1 year ago
3
updating documentation with celltype and cell filtering information
#67
drighelli
closed
1 year ago
0
CITEseq cell annotation labels
#66
drighelli
closed
1 year ago
3
Add documentation for QC in each dataset
#65
drighelli
closed
1 year ago
1
updating ontomap with ontologies
#64
drighelli
closed
1 year ago
0
Ontology IDs
#63
kbeckenrode
closed
1 year ago
3
Cord blood mtd
#62
drighelli
closed
1 year ago
5
fixing missing rownames for ECCITEseq ADT/HTO data
#61
drighelli
closed
1 year ago
0
ECCITEseq data missing rownames
#60
drighelli
closed
1 year ago
4
Ontomap updates
#59
drighelli
closed
1 year ago
0
ontomap should include function_name and DataType
#58
LiNk-NY
closed
1 year ago
3
adding ontomap file and fixing CITEseq on Marcel's suggestions
#57
drighelli
closed
1 year ago
3
Add Ludwig as author
#56
LiNk-NY
closed
1 year ago
0
adding ontomap file
#55
drighelli
closed
1 year ago
1
supplementary data
#54
drighelli
closed
1 year ago
2
quality control of cells
#53
drighelli
closed
1 year ago
6
create a ontomap
#52
drighelli
closed
1 year ago
3
celltype annotations
#51
drighelli
closed
1 year ago
3
celltype metadata in scMultiome 10x PBMC tutorial
#50
akhst7
closed
1 year ago
2
docs: fixed ref typos
#49
cvanderaa
closed
2 years ago
1
pandoc-citeproc: reference Specht2020-jm not found
#48
LiNk-NY
closed
2 years ago
1
cleaning functions documentation
#46
drighelli
closed
2 years ago
0
Update SCoPE2.Rmd
#45
drighelli
closed
2 years ago
0
SCoPE2 vignette index
#44
drighelli
closed
2 years ago
0
citeseq vignette mse object
#43
drighelli
closed
2 years ago
0
Update CITEseq.Rmd
#42
drighelli
closed
2 years ago
0
fixing seqfish vignette on spatialCoords
#41
drighelli
closed
3 years ago
1
problem on spatialCoords in seqFISH vignette
#40
drighelli
closed
3 years ago
0
SpatialExperiment creation error in seqFISH
#39
drighelli
closed
3 years ago
0
fixing DataFrame conversion for spatialData in seqFISH
#38
drighelli
closed
3 years ago
0
SingleCellMultiModal could store the experiments technologies
#37
drighelli
closed
3 years ago
5
SingleCellMultiModal function fails with G&T dataset
#36
drighelli
closed
3 years ago
1
Vignettes failing during Bioconductor repo build
#35
drighelli
closed
3 years ago
1
PBMC vignette should be named as TENxMultiome
#34
drighelli
closed
3 years ago
1
adding head to some chunks in ecciteseq vignette
#33
drighelli
closed
3 years ago
1
clean up ECCITEseq vignette output
#32
lwaldron
closed
3 years ago
3
Minor updates
#31
cvanderaa
closed
3 years ago
5
updating vignettes
#30
drighelli
closed
3 years ago
1
citeseq fixing
#29
drighelli
closed
3 years ago
0
changing seqFISH accordingly with the new SpatialExperiment class
#28
drighelli
closed
3 years ago
1
Update Contributing-Guidelines.Rmd
#27
kbeckenrode
closed
3 years ago
0
Adding a new dataset: scRNA-Seq + single-cell proteomics (SCoPE2)
#26
cvanderaa
closed
3 years ago
3
Contribution: incorrect link to Google Sheet
#25
cvanderaa
closed
3 years ago
3
ECCITE-seq data functions
#24
drighelli
closed
3 years ago
3
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