-
Hi Jan,
Thank you for such an amazing analysis tool.
I recently successfully ran the application on our Ubuntu server. However, we encountered a issue of connection. Sometimes I can connect the …
-
Dear team,
Thank you for the tool. Upon using the negative binomial approach, I am error with the multiprocessing freeze
![image](https://github.com/user-attachments/assets/89cb167b-f15d-45d5-bf0f…
-
Hello,
There are several files missing from the distro for LongAmp such as longamp_delly_calling.sh and longampfigures_distribution.py.
Is there a reason these were left out?
Also is there some …
-
Hi,
I attempted running `crass` on my data. The the command below was issued followed by the STDOUT:
```
$ crass -o /scratch/users/snarayanasamy/LAO_TS_CRISPR/D20/crass_mg-reads /scratch/users/snara…
-
Hi,
I am trying CB2 analysis in R to analyze my CRISPR data.
The package is installed properly (I guess) and example data runs fine.
When I am trying my own data, I can load the files correctly. bu…
-
Hi, a colleague of mine performed a differential compartment analysis between a CRISPRi and scrambled control experiment using dcHiC. He provided me with a bedgraph file for the full compartment detai…
-
I am having this problem using the SAM file to identify the off-target
python ~/bin/guideseq-1.0.2/guideseq/guideseq.py identify --aligned ~/Desktop/WORKS/CODE/download/AA_1.sam --target_sequence c…
-
cc @shntnu @MarziehHaghighi
Here is list of materials to generate and questions to explore. Please add anything else you think might be useful to check to this list by directly editing my comment:…
-
I'm trying to use [`crisprfinder.py`](https://github.com/phageParser/phageParser/blob/master/parserscripts/crisprfinder.py) on a big file, but it returns no output even though running the same file ma…
-
Hi @justinwang-ubc @nickswright @BaseEditor
I am Suwetha a MEng grad student pursuing Computer engineering.
I am from Chennai, Southern part of India.
This is my final semester at UBC.
I am a …