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I am writing to you because I am collaborating in a CRISPR/Cas9 knockout screening analysis. We are using the GeCKO v2 gRNA library and we found that a huge number of gene symbols are outdated. I foun…
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### Background
RNAseq of my cytosolic and mitochondrial 8x-dicodon libraries are described [here](https://github.com/rasilab/rqc_aggregation_aging/issues/60) and [here](https://github.com/rasilab/r…
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We found a tight cluster of PAFAH1B1, NDE1, NDEL1, and those 3 have the opposite morphological effect to the gene HOOK2.
Emailed Sivaram V.S. Mylavarapu Nov 29, 2023: https://mail.google.com/mail/u/0…
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Hi Jan,
Thank you for such an amazing analysis tool.
I recently successfully ran the application on our Ubuntu server. However, we encountered a issue of connection. Sometimes I can connect the …
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Hello,
There are several files missing from the distro for LongAmp such as longamp_delly_calling.sh and longampfigures_distribution.py.
Is there a reason these were left out?
Also is there some …
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We have been working hard on a database and some [cool demos](https://github.com/phageParser/phageParser/tree/master/demos) of analysis you can do with it. Our dream is to build a web front end so tha…
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cc @shntnu @MarziehHaghighi
Here is list of materials to generate and questions to explore. Please add anything else you think might be useful to check to this list by directly editing my comment:…
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I am having this problem using the SAM file to identify the off-target
python ~/bin/guideseq-1.0.2/guideseq/guideseq.py identify --aligned ~/Desktop/WORKS/CODE/download/AA_1.sam --target_sequence c…
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I'm trying to use [`crisprfinder.py`](https://github.com/phageParser/phageParser/blob/master/parserscripts/crisprfinder.py) on a big file, but it returns no output even though running the same file ma…
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Hi @justinwang-ubc @nickswright @BaseEditor
I am Suwetha a MEng grad student pursuing Computer engineering.
I am from Chennai, Southern part of India.
This is my final semester at UBC.
I am a …