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A tweet about [bifrost](https://www.biorxiv.org/content/10.1101/695338v2.full) reminded me that one of the things I am interested in exploring with spacegraphcats is multi-sample cDBG. Here's an e-mai…
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Another discussion thread. It is probably too early to implement libraries now, but it would be good to start thinking about the topic.
Currently, gfatools comes with [very preliminary APIs](https:…
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Hi @cdarby
Thanks for making this tool! I'm having some trouble interpreting the outputs, and I'm hoping you can help.
So I've run the pipeline twice now on two different 3' scRNA-seq PBMC data…
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I want to create a (2D) lattice graph where nodes are names something
like "a11", "a12", "a21", etc where the number correspond to rows and
columns.
I can see that a command
```
make_lattice(c…
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Thought I'd opened another issue for this here in the past, but seems like I hadn't.
The GFA files output from certain assemblers (flye, spades IIRC, and probably more) are kind of inaccurate -- in…
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We could use some way to index reads so that we can go from a k-mer to all reads that contain it.
Here are a few references courtesy of a Twitter conversation with @rchikhi:
[Parallel and memory-eff…
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This is a continuously updated list of Todos. If you have a suggestion, comment to the issue. I will update the list if the suggestion fits in.
Please note that none of the items will be guaranteed t…
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Hi,
`vg augment` crashes due to a failed assertion (https://github.com/vgteam/vg/blob/master/src/pileup_augmenter.cpp#L231) when I want to augment my cactus graph with one chunk of a big GAM file.
…
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This issue will provide a roadmap for the library, along with specific tasks (TODOs). Ideally we should break these tasks into short and long term tasks and, as the library becomes more mature, tie i…
rob-p updated
3 years ago