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lh3
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gfatools
Tools for manipulating sequence graphs in the GFA and rGFA formats
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gfa-server: Add support for Unix domain sockets
#36
0xaf1f
opened
1 month ago
0
gfa2fa - what happens when using the -s flag
#35
mb47
opened
2 months ago
0
Can rGFA be used to liftover coordinates between genomes?
#34
adadiehl
opened
3 months ago
0
gfatools view to subset a gfa file
#33
Dkyuan
opened
1 year ago
2
Online GfaViewer on gfaServer
#32
hcsun1
closed
1 year ago
5
The question about format of fasta using gfatoos gfa2fa
#31
Daishoulu
opened
1 year ago
0
Using `gfatools asm`
#30
aafshinfard
opened
1 year ago
0
How to convert fastG to GFA?
#29
tarunaaggarwal
opened
1 year ago
0
meaning of NM:i:5 AS:f:56.3 dv:f:0.0694444 id:f:0.930556 cg:Z:4=1X2=1I38=1D5=1I5=1X13=?
#28
lingliao
closed
1 year ago
2
Can I extract path sequences from GFA or rGFA by pathname？
#27
8banzhuan
opened
2 years ago
0
"A" line produced by gfatools asm
#26
yatsukha
opened
2 years ago
0
Invalid GAF is produced
#25
asl
opened
2 years ago
1
Mayhem
#24
jacobclemente
closed
2 years ago
0
conversion of GFA to rGFA
#23
gsc74
opened
2 years ago
4
gfatools bubble doesn't work on GFA after bubble popping with gfatools asm
#22
lstevens17
opened
2 years ago
0
About "--bf" the bloom filter
#21
cyr20040123
closed
2 years ago
0
GFA2 format from miniasm not properly converting to fasta
#20
Sandman2127
closed
2 years ago
1
can I convert single line path from complex structures into fasta files
#19
zhoudreames
closed
1 year ago
1
Fix SQL glitches in INSERT INTO {seg,arg} when rank is 0
#18
zwets
closed
3 years ago
1
Add a License
#17
natir
opened
3 years ago
4
Is there support for translation between stable coordinate and segment/local coordinate for GAF?
#16
SHuang-Broad
opened
3 years ago
1
gfa view subgraph radius definition
#15
ggonnella
closed
3 years ago
4
blacklisting region from a region file
#14
chklopp
opened
4 years ago
0
Fields in bubble output
#13
egoltsman
closed
3 years ago
1
Format clarification
#12
fbemm
closed
4 years ago
2
paths from rGFA
#11
egoltsman
closed
4 years ago
4
Cigar strings altered after extracting subgraph
#10
rlorigro
opened
4 years ago
0
Lost segment sequences while producing unitigs
#9
snurk
opened
4 years ago
1
Logic of taking the subset within a given radius
#8
snurk
closed
4 years ago
8
Bug in producing unitig graph
#7
snurk
opened
4 years ago
0
Subgraph option question
#6
snurk
closed
4 years ago
1
Bug in bubble popping algorithm
#5
snurk
closed
4 years ago
1
Conflicting types when running make
#4
MBMumphrey
closed
5 years ago
1
Standalone libraries to work with GFA
#3
lh3
opened
5 years ago
4
Defining Walk/W-lines in GFA1
#2
lh3
opened
5 years ago
19
rGFA vs vg's path model
#1
lh3
closed
5 years ago
4