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Hello,
I am currently in the process of running the Template Creation Step for the dMRI Harmonization Pipeline. As part of the preparation, I executed ./pipeline_test.sh to verify that the template…
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- to unroll 4D data over the 4th dim,
- optional input of ROI set or mask
- option to cluster the rows (spatial/voxel-wise) and/or columns (time or gradients),
- as well as select specific rows a…
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https://github.com/finnlennartsson/kpum_noddi/blob/94e7db78fd2b0e7bad849225fd5126fa37df62ea/shell/dmri_5TT_registration.sh#LL193C1-L256C1
Check with Domagoj.
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from Ron
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Epic: #35
Feature: #66
Feature Release:
Required knowledge: mid-level
### Description
As a member of pipeline team, I want to prepare a summary of the most recent and popular dMRI QC methods, so t…
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## Summary
Even though the repository has been updated [Dec 15, 2023](https://github.com/SlicerDMRI/SlicerDMRI/commits/master/), the DMRI extension offered for 5.6.1 is still from Dec 12, 2023. Th…
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Hello BIPs World,
I would like to analyze a DTI dataset using BIPs, but I seem to have hit a bit of a snag. Whenever I invoke "bips -l", I am presented with a wonderful list of workflows and their h…
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Inline images are not being displayed inline, e.g.:
https://carpentries-incubator.github.io/SDC-BIDS-dMRI/diffusion_tensor_imaging/index.html
It looks like the the class is not yet available throu…
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Assume that only .nii file exists and .bval is missing, then I get following error:
```
$ source /usr/local/lib/bash_basics/bash_basic_functions.sh
$ separate_b0_and_dwi dMRI_AP.nii.gz
File dMRI…