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See https://github.com/pato-ontology/pato/issues/357
Currently weight is used: https://github.com/obophenotype/upheno/blob/589166596f3064b0badde5354467acb7229175bc/src/patterns/dosdp-dev/abnormalWe…
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For example, XPO is compiled using only[ DOSDP patterns](https://github.com/obophenotype/xenopus-phenotype-ontology/tree/master/src/patterns/dosdp-patterns) (no manual curation), which adds up to 3112…
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Right now (dosdp-0.1.8.dev1) its a bit chatty and hard to read:
```
matentzn@mbp:~/ws/bio-attribute-ontology/src/ontology (odk-migration) $ dosdp validate -i ../patterns/dosdp-patterns/entity_attr…
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When building prototypes from here:
https://github.com/obophenotype/Pheno_odk_test/tree/master/src/patterns
`dosdp-tools prototype --obo-prefixes --template=. --outfile=../patterns/pattern.owl`…
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Things that need to be fixed after updating to ODK 1.3.0:
**DOSDP patterns:**
- So far, I can run `sh run.sh make ../patterns/definitions.owl -B IMP=false`, but `sh run.sh make ../patterns/patter…
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Should the DPs be consolidated in the Uberon repo?
Having said that I am likely lacking a lot of context about vccfo
E.g. I am looking at vessel
DP:
https://github.com/obophenotype/vccf-on…
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We need a pattern for "occupational exposure". for example, we need the following terms:
Occupational fume exposure
Occupational grain dust exposure
Occupational exposure to urea-based herbicide
…
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* [DOSDP - activator activity](https://github.com/geneontology/design_patterns/blob/master/validated_patterns/activator_activity.yaml)
* [tsv of existing terms + python code used to generate](https:/…
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When looking at description at the workshop, Paola spotted an error that she said could be fixed relatively easily.
Currently our DOSDP pattern starts everything with "A" (eg "A oligodendrocyte...")…
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## Desiderata
- [ ] All pheno ontologies (at least MP and HP) should use the same design pattern _approach_
- [ ] design patterns in MP and HP should be _coordinated_
- they may diverge in terms of …