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This is mostly the results and discussion on the drugbank dataset (and a set of issues to improve the results) than a stand-alone issue.
To reproduce the results run the following command
``` bash
x…
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## Expected to have 'InChiKey', 'SMILE', and 'target_aa_code'
nodes_df = pd.read_csv('some_csv_file_path')
# Example entries
#nodes_df['InChiKey'] = ['HUMNYLRZRPPJDN-UHFFFAOYSA-N']
#nodes_df['…
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Dear Sir,
I have some queries regarding AUC score reported in your article titled “Drug-target interaction prediction using ensemble learning and dimensionality reduction”
Query 1:
I have run you…
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Variant page feedback points from EMD (from discussion with Carlos):
- [x] Ensembl link at the top of page: is it possible to take the user directly to the variant page instead of the search result…
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[Quartz crystal microbalance with dissipation](https://en.wikipedia.org/wiki/Quartz_crystal_microbalance_with_dissipation_monitoring) (QCM-D) is an advanced technique that enables real-time screening …
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Dear Omnipath team,
I would like to know if it is currently possible to access all data in Omnipath using the Cytoscape plugin?
Or will it miss certain interactions when compared to OmnipathR and py…
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Title: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19
## Please paste a link to the paper or a citation here:
Link: https://arxiv.org/abs/2004.07229
##…
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Hello, I am very interested in your work.
In HyperAttentionDTI, there is early stopping code in 'pytorchtools.py' and also use in 'HyperAttentionDTI_main.py'.
But when I run the code, it doesn't s…
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Dear author:
I am a second-year graduate student in the School of Biology, South China University of Technology, Guangzhou. I read your paper "ML-DTI: Mutual Learning Mechanism for Interpretable…
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I want to add predicates to the model.
'target': a subject (drug/small molecule) "target" an object (protein/gene)
'target by': a subject (protein/gene) is "targeted by" an object (drug/small mole…