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Is it possible for us to get the exact same file as the result of you running this article, since I'm a beginner at coding I don't know if I have the right file.
The files I need are:
**## Run t…
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When I used samtools index to index the bam file, I found that an error would be reported. The species is Ginkgo biloba and the chromosome length is longer than that of humans. It cannot be constructe…
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I am new to eccDNA identification .After reading the two articles of Circle-Map and tutorials, I have some questions of using Repeats subcommand : Why Repeats need not to extract discordant paired rea…
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Hello,
I have a question while understanding the code, at line 333 of eccDNA_RCA_nanopore.py
![IMTIRERA8%80U7NG7SVGT14](https://user-images.githubusercontent.com/100178074/163087010-1e90ff1b-d715-47…
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Hi eccDNA_RCA_nanopore team,
Thanks for developing such an useful tool. I might have a general question about two empty output files. First, in the sequence info file, the values for all columns ar…
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![image](https://user-images.githubusercontent.com/114301070/207079732-044140bd-4074-4e92-a2bb-71323b54c754.png)
What does column2(symbol _+ symbol _-) and the last column (insert, delete, no indel) …
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Dear iprada,
Recently, I am trying to use Circle-Map to perform eccRNA calling, I followed the tutorial you posted here using Realign module, my issues are:
1. what's the difference between Re…
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I am a novice in the use of AA software. I see that the -ref option in the guide includes reference genomes for humans and mice, so I would like to ask if I can use other reference genomes to detect e…
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I'm sorry to bother you, but I had a strange problem when using circle-map for EccDNA identification. I have a total of 14 samples, of which 12 samples were identified very quickly and finished in abo…
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Hello,
I was trying to run the pipeline with my eccDNA data. I got some confusing results. My reference (>MLV) is 8857bp, however, in the output, some fragments are longer than the reference.
For …