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## 🚀 Feature
* Double check licencing
* Investigate, whether it is possible to bulk download PubMed "entries" **(note that they do not contain the full text)**
* If possible, also potentially imp…
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## 🚀 Feature
PMC data is sorted by journal, e.g. (see `/raid/projects/bbs/pmc`):
```text
Zool_Scr
Zoomorphology
Zoonoses_-_Infections_Affecting_Humans_and_Animals
Zoonoses_Public_Health
'Z…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
Python 3.5.2 (default, Nov 23 2017, 16:37:01)
[GCC 5.4.0 20160609]
CPython
Linux-4.4…
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entrez requests require an email for a few years. However, in practice it works fine without email. Similarly, entrez now requires an API key but in practice it works fine if it's omitted.
The diff…
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**Operating system**
Red Hat 6.6 Linux
**Package name**
`lima v2.0.0`
**Conda environment**
```
# Name Version Build Channel
_libgcc_mutex …
cwb14 updated
4 years ago
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### 症状
eUtilitiesを使ったPubMed IDの妥当性検証を必要とするサンプルについて、Validation速度が著しく低下した（時期不明）。2-3秒だったものが13-15秒ほど掛かっている。
### 検証
eUtilitiesAPI(API key使用)に限らず、単なるHTMLコンテンツのダウンロードにも時間がかかる。
NCBI以外のサイトの応答は問題ない。またDDBJ…
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I am using a `libcurl` that attempts to use HTTP/2 by default. When using `rentrez` I'm getting errors on every other request, e.g.
```
Error in curl::curl_fetch_memory(url, handle = handle) :
…
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This is likely due to several issues from splitting out NCBI-related modules from core.
- [x] Bio::DB::RefSeq circular dependency (related to https://github.com/bioperl/Bio-DB-RefSeq/issues/1)
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Result of `NCBI_snp_query('rs9970807')$BP` is `56499991`, however [here](http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=9970807) it is shown as `56499992`. Is this a design decision? If so, …
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Annotater hangs while trying to get lineage from NCBI for LXPA01121130.1. The output says:
`GetLineage: didn't get valid taxid: for GI:LXPA01121130.1 so getting lineage from NCBI`