PacificBiosciences pbbioconda issues

PacificBiosciences / pbbioconda

PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

BSD 3-Clause Clear License

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issues

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Example Kinnex data set error 404

#701 FabianJetzinger opened 23 hours ago
0
pbmerge - overlapping movie/zmw combination

#700 gevro opened 1 day ago
2
CRAM support for more tools

#699 mrvollger opened 1 week ago
0
Iso-Seq Pigeon classify GTF error

#698 akulan1 closed 2 weeks ago
1
PBSV system requirements

#697 MKaandemir closed 2 weeks ago
3
What's the difference of = and X cigar of pbmm2?

#696 leon945945 closed 1 month ago
3
lima not outputting enough ZMWs - issue with primers or primer choice?

#695 carla-hazelf closed 2 weeks ago
1
isoseq groupdedup for variant analysis

#694 gneedle1 closed 2 weeks ago
1
What can I do only with .fastq reads?

#693 dudududu12138 closed 2 weeks ago
1
isoseq for scRNA: UMI with homopolymers are not removed

#692 JiangyanYu closed 2 weeks ago
1
isoseq for scRNA: duplicate molecules are kept

#691 JiangyanYu closed 2 weeks ago
1
IsoPhase on MAS-Iso-seq data for haplotyping

#690 camelest closed 2 weeks ago
2
identify transcripts with polyA tails

#689 ZachLW closed 2 weeks ago
1
iso-seq reads and pbfusion

#688 mariachiara-github closed 1 month ago
2
Generate HiFi reads

#687 mariachiara-github closed 2 weeks ago
1
isoseq3 collapse stops with fatal error map::at

#686 jchariker closed 1 week ago
3
Isoseq3 cluster2 exits without error message

#685 sagnikbanerjee15 closed 1 week ago
2
isoseq correct is very sensitive for style of input

#684 chvandijk closed 2 weeks ago
1
Segmentation fault (core dumped) when installing ilma.

#683 JiaLonghao1997 closed 2 weeks ago
1
pigeon classification doesn't work (Chinese Hamster)

#682 yesh1m closed 2 weeks ago
5
Lima failing to detect CCS data after Skera de-concatination & Bam2Fastq conversion

#681 roylejw closed 2 weeks ago
1
filter

#680 lva85 closed 2 weeks ago
1
Cannot download Iso-Seq example data

#679 ianyfchang closed 2 weeks ago
2
Error while running Falcon

#678 ptamamang24 closed 2 months ago
1
lima ERROR: [pbcopper] alarm ERROR: cannot write to empty alarm filename

#677 kenneditodd closed 2 weeks ago
12
The *.flnc_count.txt output from isoseq collapse does not generate columns for multiple samples

#676 YanqingHuang01 closed 1 week ago
2
CL: Annotation of alignment classes

#675 mariachiara-github closed 2 months ago
7
Demultiplexing using lima

#674 Nitin123-4 closed 3 months ago
2
Mapping MT and RP genes from 10x single cell kinnex

#673 ollieeknight closed 2 weeks ago
2
Isoseq3 cluster fatal run

#672 EglantineMB closed 2 weeks ago
2
questions about pbsv

#671 rabbitdsy closed 2 weeks ago
1
dedup

#670 GelatinousGiant closed 2 weeks ago
1
hifihla call-reads: thread 'main' panicked at src/cli/callreads_cli.rs:320:14:

#669 hhuili closed 3 months ago
3
Convert FASTQ in unaligned BAM

#668 mariachiara-github closed 3 months ago
1
isoseq refine

#667 GelatinousGiant closed 2 weeks ago
9
ipa fails at 18-purge_dups

#666 tpshea2 closed 2 weeks ago
1
pbfusion

#665 tky199996 closed 3 months ago
11
Isoseq collapse filtering out criteria

#664 MengjunWu closed 2 weeks ago
2
Help for " FATAL | ccs ERROR: map::at" using ccs

#663 yuan102379 closed 3 months ago
5
pbmm2 issue (1.7.0)

#662 tanyasarkjain closed 3 months ago
2
unable to run on mac

#661 proukakis closed 3 months ago
2
visualize.py issue

#660 mariachiara-github closed 3 months ago
16
Include polyA peaks as an input for pigeon classify

#659 MengjunWu closed 3 months ago
1
uncaught exception for isoseq cluster2

#658 chenhijy closed 3 months ago
2
pbfusion error

#657 DongTang91 closed 3 months ago
1
Fatal error pigeon classify . Problem with cage-peak bed file

#656 davidvilanova closed 2 weeks ago
1
pbfusion::bam_scanner unknown data type in input

#655 shizhuoxing closed 4 months ago
5
# recalladapter issue

#654 xiangpingyu closed 3 months ago
1
Where can I find pbsv source code?

#653 tillea closed 4 months ago
2
pigeon make-seurat : cell count is different from the result from isoseq correct

#652 Hyeyeonggg closed 3 months ago
2