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PacificBiosciences
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pbbioconda
PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
BSD 3-Clause Clear License
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Where can I find pbsv source code?
#653
tillea
closed
5 months ago
2
pigeon make-seurat : cell count is different from the result from isoseq correct
#652
Hyeyeonggg
closed
4 months ago
2
isoseq collapse results in redundant isoforms
#651
christine-liu
closed
1 month ago
9
Question on Quantification & Differential Expression Workflow
#650
MGordon09
closed
4 months ago
1
Lima execution seems unexpectedly slow on MASseq run
#649
cyrilcros
closed
5 months ago
4
isoseq collapse error: Could not find length of CCS read
#648
Hyeyeonggg
closed
5 months ago
2
pigeon make-seurat error: could not open plain text file
#647
JiangyanYu
closed
4 months ago
2
How to extract INS.DUP type REF and ALT sequence
#646
lixuenan
closed
4 months ago
1
Pigeon classify fails
#645
sojichld
closed
5 months ago
3
isoseq3 installation on macOS
#644
a11is0nshi
closed
5 months ago
1
isoseq groupdedup std::get: wrong index for variant
#643
MT2901
closed
4 months ago
1
Pigeon report script fails
#642
dsampath31
closed
4 months ago
2
jasmine ERROR: Missing HiFi kinetics.
#641
rabbitdsy
closed
4 months ago
1
Default PBSV output incompatible with Hiphase due to IUPAC
#640
mrvollger
closed
6 months ago
7
PBSV to detect heterogeneity?
#639
TristanJang
closed
4 months ago
1
pbfusion
#638
DongTang91
closed
6 months ago
0
mistake in isoseq refine documentation for single cell
#637
MengjunWu
closed
6 months ago
2
pbsv multisample poor perfomance ?
#636
leone93
closed
4 months ago
1
pbmm2 option like `-K` in minimap2
#635
SHuang-Broad
closed
4 months ago
1
Jasmine ERROR
#634
Duyh814
closed
6 months ago
1
Genomes and Annotations
#633
taotao0408
closed
7 months ago
1
Identification of structural variants in simulated genome by pbsv
#632
priyambial123
closed
7 months ago
1
snakemake --reason deprecated
#631
johnstonmj
closed
1 month ago
5
how can I merge the single-cell matrix of two samples?
#630
gygys
closed
7 months ago
1
pigeon 1.1.0 and 1.2.0 output has issue to generate the reports similar to sqanti3.
#629
unique379r
closed
7 months ago
1
Isoseq cluster2 failed when running with more than 30M consensus reads.
#628
7kylin
closed
7 months ago
5
Biosample overwrite names using lima errors as an unknown option
#627
kxr104
closed
7 months ago
1
lima summary and lots of min pass filtered reads
#626
aherman-umn
closed
7 months ago
1
How to convert pbid in a gff file to gene name or gene id.
#625
gygys
closed
7 months ago
1
How to analyze mas-iso-seq data using suppa ?
#624
gygys
closed
8 months ago
1
still having trouble matching --preset ISOSEQ settings
#623
mkostich
closed
7 months ago
1
trouble matching --preset ISOSEQ settings
#622
mkostich
closed
8 months ago
3
Question: does pbmm2 modify MM and ML tags for supplementary alignments with hard clippings?
#621
lh3
closed
8 months ago
2
Problem with pigeon prepare
#620
JesusMHU
closed
8 months ago
1
IPA error command
#619
wez078
closed
8 months ago
5
pbmm2 give many alignments for one reads
#618
Soleilcode
closed
8 months ago
1
When mapping Isoseq reads to genome, do I need the repeatmasked genome?
#617
Yuzhang0102
closed
8 months ago
1
isoseq collapse creates empty output
#616
hitowie
closed
8 months ago
7
https://downloads.pacbcloud.com/public/dataset/ not publicly available?
#615
bfoquet
closed
7 months ago
1
time: command not found
#614
brunocontrerasmoreira
closed
9 months ago
1
how to construct the barcode_primer.fa file
#613
TripleEmma
closed
7 months ago
1
Error in rule phasing_prepare
#612
jaavedm
closed
9 months ago
1
Confusion about PacBio IDs
#611
TinyTasy
closed
9 months ago
1
lima after ccs: handling of kinetics tags
#610
gevro
closed
9 months ago
1
segfault with PBSV
#609
jamesdalg
closed
9 months ago
1
skera: reads are both passing and non passing
#608
phpeters
closed
10 months ago
1
Multiplex workflow starting with hifi.bam ...
#607
drkoryjohns
closed
9 months ago
2
[Not a bug report] Fixing header might resolve errors like #345
#606
SHuang-Broad
closed
11 months ago
1
Bug in actc --chunk
#605
gevro
closed
11 months ago
5
collapse error - im tag missing
#604
Ollipolli1909
closed
11 months ago
1
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