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Hi,
I had a dataset of stroke patients(T1w, fmri, lesion-mask) and tried to run fmriprep to get structural and functional results.
Lesion-mask image was placed and named correctly.
When I chec…
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bdata is a very convenient format, so I want to convert my nifti dataset to bData.
1. I read "example_fmriprep.ipynb" in the "examples" file to learn how to do the job. Is input dataset in (https…
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### What version of the bids app were you using?
0.5.1.dev0+gd97c669.d20240412 / [docker://bids/giga_connectome@sha256:8b43fb8d198cc31f7cce757fa83ca98f4cf23b5c57800a8c876043b4341d4e7e](https://hub.…
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Thank you so much for such a great package!
If I want to use Nipype for fMRI analyses based on SPM or FSL for example, does installing Nipype in a python environment suffice for all the analyses? Wou…
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### Summary
I am post-processing fMRI data that has already been run through fMRIPrep. I am trying to use `fsl.ExtractROI()`, but every time I run it, a segmentation fault occurs, and my stack is u…
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Hello Nipype community,
MacOS - 10.14.6 - Mojave
nipype version 1.5.0-rc1 (latest: 1.4.2)
Anaconda - Spyder
Python 3.7.6
(my previous installation with Jupyterlab worked without the following…
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gkiar updated
5 years ago
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This issue tracks candidate datasets, and their usability status.
Up = Ingested, extracted, fmriprep dataset published, available on neuroscout
| Dataset | Source | Modality | Issues …
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Hi,
I hope you can help me trouble shoot the following issue. In both using the data @alixlam provided on OSF and in using some data of my own with a fake lesion mask I am getting this error.
I…
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I am running the following command:
docker run -ti --rm \
-v /Users/neurolab/Desktop/Test_sub_002_fcmriprep_ciftify:/data:ro \
-v /Users/neurolab/Desktop/Test_sub_002_fcmriprep_ciftify:/o…