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One of the Kraken2 indexes is an exact duplicate of another, instead of containing the actual distinct data.
So -- this needs a new index to be created (or found?), and replaced over the existing i…
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There are many cases where test parameters are used that are not defined in the inputs.
I guess most cases are easy to solve, but may require a bit of research:
- check if the parameter was th…
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Ref workflow: https://training.galaxyproject.org/training-material/topics/epigenetics/tutorials/hicexplorer/workflows/
Ref IDC feedback: https://github.com/galaxyproject/idc/issues/53
Ref reported a…
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In the EU, a user encounters a `KeyError: 'name'` when loading the `bakta` tool in Galaxy. The error occurs consistently for this specific tool, regardless of the Galaxy history used (attempted with a…
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It's dokku, we need to follow dokku's deployment guide
The absolute bare minimum is a procfile, e.g. https://github.com/galaxyproject/ptdk/blob/main/Procfile
and then we setup the git remote to pu…
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e.g. https://training.galaxyproject.org/training-material/topics/single-cell/tutorials/GO-enrichment/tutorial.html doesn't get indexed by tess because it doesn't follow the GTN formatting guidelines o…
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For simpler deployment we'll have a github action that deploys the site from a `production` branch on merge of new changes.
So, moving forward, PRs can be merged to dev whenever, and then merging d…
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The galaxyproject.org [Global Hub](https://nstoler.com/img/posters/2022-GCC.png) project is nearly ready for launch. The galaxyproject.eu [homepage](https://galaxyproject.org/eu/), its [news](https://…
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Hi!
First of all sorry for bothering you on this channel but I don't find any opportunity to contact you on mercurial repository.
I would like to ask if there is a possibility to get the seqprep t…
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Stuff/Links to fix after renaming:
* [x] GTN Material https://github.com/galaxyproject/training-material/pull/5072
* [x] Research Software Ecosystem (RSEc) CI https://github.com/research-software-e…