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## Overview
We won't be ingesting these like we do with other sources. They will be doing mapping work to Mondo. So we should remove any / most existing setup / code we have for these sources.
We …
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During our integration of GARD we encountered 242 GARD ids that map to more than one Mondo ID. This means that, Mondo decided to "lump", while GARD favours a "split". Since we trust the GARD team and …
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by default that card takes names from entities, but by default should be option to change that name :)
like example:
> type: custom:mini-gauge-card
> max: 300
> min: 0
> measurement: ' W'
> …
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We should take a note when a disease is sourced from, say, an OMIM id. Right now, we dont know, if we have two "equivalenTo", which one is the "original one". They are the same. I think its good to kn…
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**What**: A list of Mondo terms that MedGen is suggesting may be candidates for obsoletion.
**Why**: Some Mondo terms have x-refs to only obsolete terms in another ontology (OrphaNet, DOID, GARD) or …
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## Overview
I noticed that `mondo.sssom.tsv` has several mappings to OMIMPS terms that no longer exist ([slack convo](https://monarchinitiative.slack.com/archives/G01JACCEDAB/p1720820331689159)).
…
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We have a term that was added in #5261
```yaml
id: MONDO:0800145
name: non-severe combined immunodeficiency due to polymerase delta deficiency
def: "Any non-severe combined immunodeficiency in w…
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.. but release QC does:
```
[Term]
id: MONDO:0016178
name: obsolete peripheral neuropathy associated with monoclonal gammopathy
comment: Reason: out of scope. This is an Orphanet grouping class…
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**Term to split:**
MONDO:0008345 'idiopathic pulmonary fibrosis'
- [x] obsolete MONDO:0008345 'idiopathic pulmonary fibrosis'
- [x] add new OMIMPS:
[Term]
id: MONDO:0031199
name: inherited int…
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Hi!
I just tried to run the pipeline with profile local and singularity, with the test data `bats_mx1_small.fasta`. However GARD fails, apparently due some MPI setup stuff. I'm not sure if that sho…