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We really like the ability to create mutation tracks
If it could show, the recurrence across all the GDC, that would be great
If it could also show recurrence specifically across the samples in …
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When I come to the website, it says: “All slide and diagnostic images from the TCGA program are currently unavailable for download”. Could you share the lung datasets by using a Google Cloud link? : )…
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Need for a shiny portal for WIS2. The purpose is to have a platform offering:
- [ ] a comprehensive overview of WIS 2.0 and it's architecture
- [ ] guidance on how to discover and access data
- [ ] m…
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I was looking for the mutation data through TCGA portal using TCGAbiolinks and I have realized that sample size are not the same.
for instance TCGA-OV case TCGA data portal shows 419 cases, however…
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Q—maybe for the future; genomic characterization data is very useful; and CCLE’s cells were sequenced and the data exists in the GDC. We should point there as well.
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http://benevolent.ninja/lolliplot/ is not working! I want to see some full running examples
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As an End User, that has selected multiple facet values from a particular facet section or entered many individual case IDs into the Local Find Box, that are then displayed in the query bar and abstra…
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I use
`GenomicDataCommons::status() $commit [1] "e588f035feefee17f562b3a1bc2816c49a2b2b19" $data_release [1] "Data Release 16.0 - March 26, 2019" $status [1] "OK" $tag [1] "1.20.0" $version [1] 1`
…
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**Describe the bug**
I am experimenting with the lossless conversion of some JPEG files (extracted from large tiled TIFF files). Some of these images convert without an issue, but others have an erro…
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**User story**
SVS files are common in the TCGA project: https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga
For example: https://portal.gdc.cancer.gov/files/85f18a…