LincolnSteinLab gdc-viewer issues

LincolnSteinLab / gdc-viewer

A JBrowse plugin for viewing GDC Data

https://lincolnsteinlab.github.io/gdc-viewer/

MIT License

3 stars 2 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Bump minimist from 1.2.5 to 1.2.8

#126 dependabot[bot] opened 1 year ago
0
Bump qs from 6.5.2 to 6.5.3

#125 dependabot[bot] opened 1 year ago
0
Bump addressable from 2.7.0 to 2.8.1 in /docs

#124 dependabot[bot] opened 1 year ago
0
Bump moment from 2.29.0 to 2.29.4

#123 dependabot[bot] opened 1 year ago
0
Bump async from 3.2.0 to 3.2.4

#122 dependabot[bot] opened 2 years ago
0
Bump moment from 2.29.0 to 2.29.2

#121 dependabot[bot] closed 1 year ago
1
Bump minimist from 1.2.5 to 1.2.6

#120 dependabot[bot] closed 1 year ago
1
Bump addressable from 2.7.0 to 2.8.0 in /docs

#119 dependabot[bot] closed 1 year ago
1
use setup.sh in Dockerfile

#118 GFJHogue closed 3 years ago
0
Bump lodash from 4.17.20 to 4.17.21

#117 dependabot[bot] closed 3 years ago
0
[fix-failed-tests] adjusts tests for new gdc data; forces node:14 in docker file due to incompatability

#116 carolinebridge closed 3 years ago
0
Bump rexml from 3.2.4 to 3.2.5 in /docs

#115 dependabot[bot] closed 3 years ago
0
Bump kramdown from 2.3.0 to 2.3.1 in /docs

#114 dependabot[bot] closed 3 years ago
1
Bump ini from 1.3.5 to 1.3.8

#113 dependabot[bot] closed 3 years ago
0
add support for MAF files

#112 GFJHogue closed 3 years ago
0
Add local file selection in GDCByFileIdDialog for local files & missing index files

#111 GFJHogue opened 3 years ago
0
Support already working GDC filetypes (open-access) with byFileId UI

#110 GFJHogue closed 3 years ago
0
Controlled access, indexed, gzipped, VCF files

#109 GFJHogue closed 3 years ago
1
bump JBrowse 1.16.6 -> 1.16.10 (Dockerfile)

#108 GFJHogue closed 3 years ago
0
refactor adding controlled access tracks; prep for more filetypes/missing values

#107 GFJHogue closed 3 years ago
1
use inheritance instead of copy-paste for gdc-viewer BAM

#106 GFJHogue closed 3 years ago
0
only access just-the-docs remotely

#105 GFJHogue closed 3 years ago
0
Fix Dependabot alerts (kramdown & lodash)

#104 GFJHogue closed 3 years ago
0
Integration tests break as new public entries are added to GDC

#103 GFJHogue opened 3 years ago
0
use JBrowse BlobFilehandleWrapper (fixes controlled access BAM)

#102 GFJHogue closed 3 years ago
0
Controlled access BAM not working; BlobFilehandleWrapper copy not needed & contains buggy typo

#101 GFJHogue closed 3 years ago
0
Add a code of conduct

#100 agduncan94 opened 3 years ago
0
change references from old repo

#99 agduncan94 closed 3 years ago
0
Feature/controlled access bam

#98 agduncan94 closed 3 years ago
0
Autocomplete for Search By File ID/Name

#97 agduncan94 opened 3 years ago
0
Add UI flow for BAM slicing

#96 agduncan94 opened 3 years ago
0
Add UI flow for adding files by case ID

#95 agduncan94 opened 3 years ago
0
Investigate other controlled access file types

#94 agduncan94 opened 3 years ago
0
Extend the by file id/name UI to support the remaining controlled access files

#93 agduncan94 opened 3 years ago
0
Extend the by file id/name UI to support all of our open access files

#92 agduncan94 opened 3 years ago
0
Use GraphQL to determine some useful metrics regarding index files

#91 agduncan94 closed 3 years ago
4
Index files for BAM should be provided by user or UI flow

#90 agduncan94 closed 3 years ago
1
Open BAM and BAI files in the Add track menu

#89 agduncan94 closed 3 years ago
2
Feature/methylationbetavalue

#88 agduncan94 closed 3 years ago
0
Transcript Fusion Track

#87 agduncan94 opened 3 years ago
0
Gene Expression Quantification Track

#86 agduncan94 opened 3 years ago
0
Splice Junction Quantification Track

#85 agduncan94 opened 3 years ago
0
Gene Expression Quantification Track

#84 agduncan94 opened 3 years ago
0
Gene Level Copy Number Scores Track

#83 agduncan94 opened 3 years ago
0
Investigate the GDC BAM Slicing API

#82 agduncan94 closed 3 years ago
1
Investigate MAF files from the GDC

#81 agduncan94 opened 3 years ago
2
Investigate VCF files from the GDC

#80 agduncan94 opened 3 years ago
3
Investigate BAM files from the GDC

#79 agduncan94 closed 3 years ago
3
add SeqFeature store class for Gene Level Copy Number Track

#78 GFJHogue closed 3 years ago
1
Feature/improve documentation for install

#77 agduncan94 closed 3 years ago
0