-
Hi,
I had a very weird bug when scanning TF binding motifs.
I followed the instructions from the [notebook](https://github.com/morris-lab/CellOracle/blob/master/docs/notebooks/02_motif_scan/02…
-
Hi
I am interested in using this package to calculate α using my SNP data (VCF files) for Drosophila. As far as I can tell, the input should be d0 and d and a file containing the DAF and polymorphi…
-
The error message is:
```
Loading sequence file...
Allocating Memory...
Initializing data structures...
Computing TR Model Statistics...
Scanning Sequence 5...Traceback (most recent call last):
…
-
I have encountered this error:
```
ImportError: cannot import name 'default_motifs' from 'gimmemotifs.motif' (/opt/miniconda3/envs/celloracle/lib/python3.10/site-packages/gimmemotifs/motif/__init__.…
-
I have some code that can be used to identify outliers in multivariate space. I could see this as a way to combine results from multiple test statistics in genome scans (i.e. FST, genetic-environment…
-
### Description of the bug
How can I use a custom snpeff reference database, such as candida.auris, in Sarek. This snpeff reference did not included in Sarek. I tried --snpeff_cache, but not work.
C…
-
Dear Prof. Zhang:
I met errors when performed GWAS using IIIVmrMLM as shown below:
`[1] "Single-environment analysis for Pheno1 begins"`
`[1] "Kinship matrix caculating"`
`Error in t(uu) %*% …
-
I think sourmash is an interesting tool, as it is so fast in scanning vast libraries of genomes. We should add support for its output.
-
**Related To**
- [ ] Bactopia
- [X] Bactopia Tools
**Is this something you would like to see added?**
[MiGA](http://microbial-genomes.org/) has a lot of useful reports, especially [MyTaxa Scan…
-
Hi ,
I have a normal and tumor bam file from patient sample.I would like to view the micro satellites in the sample.I tried scanning reference genome hg38 and hg19 from ucsc genome browser.
I can cr…