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taxprofiler
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taxpasta
TAXnomic Profile Aggregation and STAndardisation
https://taxpasta.readthedocs.io/
Apache License 2.0
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feat: change output of BIOM format
#149
Midnighter
closed
3 weeks ago
0
[Feature] Adding metabarcoding/amplicon support
#148
paulzierep
opened
1 month ago
1
Warn compositionality
#147
Midnighter
closed
2 months ago
2
docs: add FAQ section to the documentation
#146
Midnighter
closed
3 months ago
1
[Feature] Changing/adding taxonomies on standardized profile tables
#145
Swindle98
opened
3 months ago
1
Error with Biom format output from kraken2 report
#144
UmaJan
closed
3 months ago
4
[BUG] Metaphlan4 run error in Microba datasets
#143
minhtrung1997
closed
2 months ago
8
[Feature] add an option to let taxpasta report relative abundance as fractions instead of only counts
#142
Midnighter
opened
6 months ago
1
[BUG] tax entries with `no rank` failed `--add-lineage`, `--add-id-lineage` or `--add-rank-lineage`
#141
MajoroMask
closed
6 months ago
2
[BUG] MetaPhlAn 4 output with duplicate clade tax id is not supported
#140
MajoroMask
opened
9 months ago
4
fix: repair adding tax info to results
#139
Midnighter
closed
9 months ago
2
[BUG] (I think): "Unrecognized file type extension '.biom'"
#138
emilyvansyoc
closed
6 months ago
10
[BUG] Adding taxon names to the output fails
#137
SannaAb
closed
9 months ago
6
Allow ignoring profile errors when merging, message on empty profile
#136
Midnighter
closed
9 months ago
1
Allow ignoring profile errors when merging
#135
Midnighter
closed
9 months ago
0
Feat biom tax table
#134
Midnighter
closed
10 months ago
1
[Feature] Add a taxonomy table to the BIOM output
#133
Midnighter
closed
10 months ago
0
Fix reverse lineage
#132
Midnighter
closed
10 months ago
0
[Feature] Reverse the order of the current lineages
#131
Midnighter
closed
10 months ago
0
Feat: add rank lineage
#130
Midnighter
closed
10 months ago
6
[Feature] Add support for kmcp profiler
#129
sofstam
closed
10 months ago
0
Start adding kmcp profiler
#128
sofstam
closed
10 months ago
7
[Refactor] Provide an internal error hierarchy to simplify exception handling
#127
Midnighter
opened
11 months ago
0
[Feature] Add `--add-rank-lineage` to `taxpasta merge` and `taxpasta standardise`
#126
MajoroMask
closed
10 months ago
2
Add Joss citation badge
#125
jfy133
closed
11 months ago
3
fix: force parsing specific columns as float
#124
Midnighter
closed
11 months ago
1
[BUG] Problem with kraken-type reports (from KrakenUniq)
#123
jfy133
closed
11 months ago
2
chore: add citation file
#122
Midnighter
closed
12 months ago
3
Address editor comments
#121
jfy133
closed
12 months ago
0
Fix date format
#120
xuanxu
closed
12 months ago
1
Use no-test logo for website header
#119
jfy133
closed
1 year ago
1
Add figure
#118
Midnighter
closed
1 year ago
0
Improve logos
#117
Midnighter
closed
1 year ago
0
Add PyOpenSci badge
#116
jfy133
closed
1 year ago
1
Adds a range of images
#115
jfy133
closed
1 year ago
1
[Feature] Add support for Sourmash
#114
Midnighter
opened
1 year ago
5
Should we support the OPAL format as output?
#113
Midnighter
opened
1 year ago
10
Minor grammartical and phrasing fixes
#112
jfy133
closed
1 year ago
0
[BUG] CRITICAL error when parsing MetaPhlAn4's output
#111
apcamargo
closed
1 year ago
2
Moritz review
#110
Midnighter
closed
1 year ago
2
Add support for ganon
#109
jfy133
closed
1 year ago
5
[Feature] Add support for ganon 'tre' report
#108
jfy133
closed
1 year ago
0
Support Metaphlan4 format
#107
TheOafidian
closed
1 year ago
5
Comments and suggestiosn on whole manuscript
#106
jfy133
closed
1 year ago
1
Add first suggestions
#105
sofstam
closed
1 year ago
0
Paper: Changes/suggations on affiliations/acknowledgements/summary
#104
jfy133
closed
1 year ago
1
WIP: fix links by using relative ones to markdown files
#103
Midnighter
closed
1 year ago
5
Avoid type coercion for domain models
#102
Midnighter
opened
1 year ago
0
feat: raise parser warning as exception
#101
Midnighter
closed
1 year ago
2
[BUG] Certain parser problems are only warnings
#100
Midnighter
closed
1 year ago
0
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