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Hi,
I am trying to get the access to geoparse twitter benchmark dataset. I currently do not have access for the dataset. When I fill out the form and click on the 'request access' button nothing happ…
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お世話になっております。
MeCabのユーザ辞書を利用したく、ドキュメントには記載がありませんでしたがソースコードに[該当する箇所](https://github.com/geonlp-platform/pygeonlp/blob/56a73b40c1df7692039f4e2ce3e981bc21cfbc31/libgeonlp/lib/GeonlpMAImplSq3.cpp#L92)をみ…
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I am trying to download the following RNA-Seq dataset https://www.ncbi.nlm.nih.gov/sra/SRX313696[accn] with GEOParse
However, it tell me that SRR filetype is not known
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GEOparse doesn't seem to provide a way to clean up after itself. I'd like to be able to delete all of the local data that has been downloaded and created once I'm finished.
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By skipping the `read_csv` function, we lose the detection of nan values, so columns that are numeric are coded as objects.
ie
```
import GEOparse
geo = GEOparse.get_GEO("GSE112676")
geo…
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So basically there is a large hot spot over Kansas (no joke intended).
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`get_GEO('GPL1641')` fails with
OSError: Download failed due to 'Downloaded size do not match the expected size for http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?targ=self&acc=GPL16417&form=text&vi…
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I got the following error while parsing **GSM2795971** SOFT file:
```
File "pandas/_libs/parsers.pyx", line 565, in pandas._libs.parsers.TextReader.__cinit__
pandas.errors.EmptyDataError: No colu…
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Hi,
updating mordecai to 2.1.0 and dependencies:
tensorflow to 2.3.0
spacy to 2.3.2
keras to 2.4.3
Our geocoding processing now is much slower as we've started to observe lots of errors printi…
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Make sure the cwl pipeline can run on nanexpression
install missing dependencies as needed.