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Hi, I have some questions about the errors in running the magetbrain.
salloc --x11 -p day -t 1- -c 36 --mem-per-cpu 20g
source MAGeTbrain/bin/activate
module load parallel
module load Python/3.1…
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Palabras del diccionario Clínica Universidad de Navarra https://www.cun.es
ABANDONO
ABANDONO DE ANCIANOS
ABANDONO DE PACIENTES
ABARTICULACIÓN
ABARTICULAR
ABARTROSIS
ABASIA
ABASIA-ASTASIA
AB…
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Dear Dr. Devenyi,
Hope you are well.
Our team is trialling segmentation of the habenula using MAGeT and has encountered the below error when running _mb run -q parallel_:
> **+++ PrintHeader …
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This would be similar to https://bioconductor.org/packages/release/data/experiment/html/scRNAseq.html or `spatialLIBD::fetch_data()` or http://bioconductor.org/packages/release/data/experiment/html/ST…
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Either re-locate or update the issues from https://github.com/LieberInstitute/DLPFC_snRNAseq/issues to here. Update the issues based on our meeting on Friday.
Thanks Louise!
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The idea is to update the file structure to reflect https://lcolladotor.github.io/bioc_team_ds/organizing-your-work.html#jhpce-file-organization.
## `Roche_Habenula`
- [x] `habenula_*csv` -> `ra…
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Based from our late 2021 meetings with Erik, we decided to re-process the snRNA-seq data. See https://jhu-genomics.slack.com/archives/G019V8X9CVC/p1639688649081100 for the messages from back then on S…
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Dear Gabriel,
We are trying to segment the Habenula from the T1 images acquired from a subjects underwent a longitudinal intervention using the Magetbrain. we already pulled the docker container and …
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Dear Gabriel,
When we tried running the MAgetbrain on our system MAC mojave 10.14. We got following error in running the qbtach.
qbatch: error: local run call returned error code 15
Traceback (mos…