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Many modules expect to receive a tuple containing a `meta` field with id, etc. and the files as a second entry. This does not map directly on what one would obtain from various factories, e.g. `Channe…
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## Is your feature request related to a problem? Please describe
Subworkflows are currently only comprised of modules and subworkflows. This is a nice design for easily composing smaller workflows.…
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- https://github.com/nextflow-io/nextflow/issues/1934#issuecomment-788048978
- https://github.com/nextflow-io/nextflow/issues/2085#issuecomment-1025175615
- https://nfcore.slack.com/archives/CE56GDK…
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When running the mutect2 test for tumor-normal analysis the test runs fine, but an empty VCF file is generated.
This causes issues downstream when trying the use the output of GATK4_MUTECT2 in
for …