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French DOME data submitter requested new codes for METPT (https://vocab.ices.dk/?ref=201)
Code Description
HIS-PR resin inclusion
cross section - NA
HIS-PW Paraffin wax
ST-HE Hematoxylin/Eosin …
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**Primary Wrangler:**
Irene
**Secondary Wrangler:**
TBD
**Associated files:**
Google Drive: https://drive.google.com/drive/folders/1bO1XfeFXYQJ7Hk0p364-O9DDsqS-upaB
**Published study links**
Pap…
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Accumulation of edematous extracellular matrix in intima resembling mucus; pale blue on H&E. ()
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It's really cool that you can visualize spatial data by adding coordinates in the anndata obsm annotation. Here are a few feature ideas:
* Multi-sample view
Could be really useful to page through …
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Can you clarify the function and usage of DeconvolutionModule.seperateStains?
I have a Hematoxylin + AEC staining from which I would like to obtain an image representing only the AEC with the appropr…
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This ticket was initially logged in RT: https://helpdesk.ebi.ac.uk/Ticket/Display.html?id=376628
I noticed that ‘has_exact_synonym’ is not being displayed in the Term Info box in the OLS. For examp…
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Definition:
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Definition:Deposition of interstitial PAS-weak, silver negative material frequently congophilic with birefringence under polarized light. Composed of 10 nm (on average) fibrils. Can be composed most c…
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I would like to request the following types as children to fixed tissue slide specimen (OMIABIS_0000052):
- H&E stained fixed tissue slide specimen
- IHC stained fixed tissue slide specimen
IH…
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These terms are needed for OBIB to aid investigators searching for specimens that have been stained by a particular method (H&E or immunohistochemistry). The proposed pattern is to define a staining p…